Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00006 ATGAAATCCGAAACTGTAACATTCTTCTTGTTCTTGTTCTTGTTGTGGAAATGTGTGATGTCAACGAATAAGAACAACAACAATGAGATAGTAGGTGTTGAAGCTGCTTATATGAAGAAGCTTAGGGACGCCATATCCCCTGCCCCCTCCACCTGGTTCAACGTCACTAACATGTGCGACTGGAGCCACGTGATTTGCACCACCACCGTTGCCGGAACCCGCAGCATACAAGAAATCAACCTTGATTCAACGCCGCTAAATGGAACACTCCCTTCAGGTCTCAACAACTCCTTACCCTATATCACGCGCCTCATTCTCCATAATACCTCCCTCACTGGCCCTCTACCCTCCCTCGCCGGCCTCTCCAACCTCCAAGAGGTATTCCACAGCTTCAGCAACTTCACCTCCATCCCTCACGGTTGTTTCAAGGCTCTGGTAAGTTTGGAGTCGCTTATGTTGGATAACAACACCAACCTCCAACCCTGGACATTTCCCGTTGATTTAACCGACTCCACCACTCTCAACACCCTCTCTCTCGCCTATACAAACCTCATGGGATCCTTGCCAGACATATTTGCTTCCTTCCCCAGCTTGAACGAACTCGATCTCACTGGAAACACCCTCAACGGTTCGTTGCCCAAGTCCTTCGGGCTAGTACCTAACCTACAATTCCTTTTTCTTGGTGACCAGAAGAATGGTGGATTTTCAGATACAATTGAATTTCTATCATCCATGACCCGCTTGATTGATTTGAGGATTGAGAGGAACTCCTTGGAGGGTCCCATTCCCGACTTGTCAAATTGCACCTACTTGCAAGATCTGATACTGGGGGACAATCGATTAACGGGTGAAGTTCCACCTTCTCTCATGAATCTCTCCATGTTGGAGGAGGTTTCATTAGAAAACAACTTCCTGCAGGGCCCTATGCCTCTCTTCAACACCACTATTACCAAGAATATAAGCATTGAAGGTAATGGATTCTGTTTAGATCATCCTGGCCCTTGCAACCACACTGTCACCACTTTGCTCCAAATCGCTCAGGCATTTGGCTATCCACTTCTCTTGGCCCGCACGTGGCGAGGAAACAATCCCTGTAAAGGCTGGAATTTCATCACGTGCATACAGGGCAAGATCAGAACCCTCAATTTGATGAAACTGAATCTCAACGGAACCATCTCACCGGCGTTTGGGAATTTAACTGATTTGCGAGAACTGTATCTTGGCGGGAATAGTTTAAAGGGATCAATACCTGAAAGTTTGACTACTTTGTCACAACTCAAGATTCTGGATGTCTCAAACAACAACTTATCAGGGATCATACCCACATTTTCGTCTATCATCAACCTCAACACTGCAAATAATGCTTTTCTTGTTAGGCATTCTTCTCCAACTAATCAAGCAATTTCTCCAATTTCTCCAACCAATCAAGCAATTTCTCCAACTAATCAAGCAATTCCAGCTGCATCTAGAGCTACACCACTTTGGATTAAATTAGGAGAAGGAGGATATGGCATTGTCTATAAAGCAAGTTTAGCTGATGGTCAACAGGTAGCAGTAAAATTACTGAAAGAATCAAAGGGAAGTGTGGAAGAATTTGTAGATGAGGTTTTTATCATTAGCCGAACATCTCATGTGAACATTGTTTCACTTTTGGGATTTTGTTATGAAAAGAATAAAAGAGCACTCTTCTATGAATTCATGCACAATGACTCTTTAGATAAGCTCACTTATAGAAAAGGGTCTTTTAATACTAATTGTAATTTAGATTGGAACATCCTGTACCAAATCTCAATTGGAATTGCTCGAGGATTAGAATACCTACACCATGGATGTAATACAAGAATTTTACATCTTGATATTAAACTACAAAATATTCTTCTAGATGAACATTTTCAGCCAAAGATTACAGATTTTGGATTGGCTAAAATATGTAAGAAGGATCAAAGTATTATATCTATGGTTGGTACAAGAGGAACTCCAGGGTACATTGCACCAGATGTATTTAGCCGAACATATGGTAGAGTTTCTCATAAGTCTGATGTATATAGTTATGGTACGTTGATCCTTGAAATTGCTGGAGCCAGAGATAACTACTGTGAGCTAGAGGGGGTAGAATCACATGCTAGTGAAATTTGCTTTCCAGATTTGATTTACAAAGATCTTGAGCAAGGCAATATTCCAACAAGGTATTTTCCCCACAAAGAAGAAGAAAATGGTGTTGTAATGAAAATGATTTTGGTGAGCTTATGGTGTATTCAACCAAATCCATTGGATAGACCCTCCATAAGTAAAGTAATAGAGATGTTGAAAGGACAGTTAGAAACAATACCATATCCTCCAAAGCCAGTCTTATTTACTCCTCAAAAACTTATCTCATCACAATATTCAGATATGACCTGTGGCAATGAATATGATGAGACAAGTTCAATAATAGGAGATGAAATTATCTTACAAAGAAACAACCTACCACGGTGA 2475 0.4125 MKSETVTFFLFLFLLWKCVMSTNKNNNNEIVGVEAAYMKKLRDAISPAPSTWFNVTNMCDWSHVICTTTVAGTRSIQEINLDSTPLNGTLPSGLNNSLPYITRLILHNTSLTGPLPSLAGLSNLQEVFHSFSNFTSIPHGCFKALVSLESLMLDNNTNLQPWTFPVDLTDSTTLNTLSLAYTNLMGSLPDIFASFPSLNELDLTGNTLNGSLPKSFGLVPNLQFLFLGDQKNGGFSDTIEFLSSMTRLIDLRIERNSLEGPIPDLSNCTYLQDLILGDNRLTGEVPPSLMNLSMLEEVSLENNFLQGPMPLFNTTITKNISIEGNGFCLDHPGPCNHTVTTLLQIAQAFGYPLLLARTWRGNNPCKGWNFITCIQGKIRTLNLMKLNLNGTISPAFGNLTDLRELYLGGNSLKGSIPESLTTLSQLKILDVSNNNLSGIIPTFSSIINLNTANNAFLVRHSSPTNQAISPISPTNQAISPTNQAIPAASRATPLWIKLGEGGYGIVYKASLADGQQVAVKLLKESKGSVEEFVDEVFIISRTSHVNIVSLLGFCYEKNKRALFYEFMHNDSLDKLTYRKGSFNTNCNLDWNILYQISIGIARGLEYLHHGCNTRILHLDIKLQNILLDEHFQPKITDFGLAKICKKDQSIISMVGTRGTPGYIAPDVFSRTYGRVSHKSDVYSYGTLILEIAGARDNYCELEGVESHASEICFPDLIYKDLEQGNIPTRYFPHKEEENGVVMKMILVSLWCIQPNPLDRPSISKVIEMLKGQLETIPYPPKPVLFTPQKLISSQYSDMTCGNEYDETSSIIGDEIILQRNNLPR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00006 824 Gene3D Ribonuclease Inhibitor 337 460 IPR032675 -
Stsc30303g00006 824 Pfam Protein kinase domain 497 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00006 824 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Stsc30303g00006 824 Gene3D Transferase(Phosphotransferase) domain 1 568 776 - -
Stsc30303g00006 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Stsc30303g00006 824 ProSiteProfiles Protein kinase domain profile. 492 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00006 824 Gene3D Phosphorylase Kinase; domain 1 498 567 - -
Stsc30303g00006 824 Gene3D Ribonuclease Inhibitor 35 335 IPR032675 -
Stsc30303g00006 824 FunFam PR5-like receptor kinase 567 779 - -
Stsc30303g00006 824 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Stsc30303g00006 824 Pfam Leucine rich repeat N-terminal domain 40 66 IPR013210 -
Stsc30303g00006 824 Pfam Leucine rich repeat N-terminal domain 340 373 IPR013210 -
Stsc30303g00006 824 SMART LRR_typ_2 399 422 IPR003591 -
Stsc30303g00006 824 SMART LRR_typ_2 195 218 IPR003591 -
Stsc30303g00006 824 SMART LRR_typ_2 423 445 IPR003591 -
Stsc30303g00006 824 SMART LRR_typ_2 145 166 IPR003591 -
Stsc30303g00006 824 SMART LRR_typ_2 121 144 IPR003591 -
Stsc30303g00006 824 SUPERFAMILY L domain-like 39 327 - -
Stsc30303g00006 824 PANTHER OSJNBA0070M12.3 PROTEIN 15 466 - -
Stsc30303g00006 824 FunFam Leucine-rich repeat receptor-like kinase 337 460 - -
Stsc30303g00006 824 SUPERFAMILY L domain-like 339 454 - -
Stsc30303g00006 824 SUPERFAMILY Protein kinase-like (PK-like) 490 769 IPR011009 -
Stsc30303g00006 824 SMART serkin_6 497 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00006 Stsc-Chr30303 18231 21376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00006 498 797 Receptor kinase-like Gene Family AT5G38280 56.436 7.07e-107 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00006 Pkinase 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00006 - K00924 csav:115712166 655.981