Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30303g00005 ATGAGTCAAGCAAGATTGAAATCCAAAACTCAAACCAGTGACATAGCTTCATTCATCTTTTTCTTCTTCTTCTTGTGGCAGTGCGTTCTGTCAAATAATAATAACCATAATAACCAGCTTGTGGGTGAAGAAGCTGCTTATCTCTTGAAGCTTAGGGACGCCATATCCCCTGCTCCCCCTCACTGGTTCAACCACACTAACATGTGTGAGTGGACCCCGCATGTTACTTGCAACCCAGTTGGAGAAATCCGCAATGTAACTGAAATCAACCTGGTTGGAATGTCTCTTAAGGGACAACTCCCTCCAGGTCTCAACAACTCCTTTCCATCCCTCACAACCCTCAATCTCTATAACAACTCTCTCACTGGCCCTCTTCCCTCCCTCGCAGGCCTCTCTAACCTCGAAAAGGTCTACCTCAGCAGAAACAACTTCACCTCCCTCCCTCATTATGATTCCTTCCGGGGTCTGTTTCTCTCTTTCGCCGCTTCAAACCTCATCGGCTCCTTGCCGCCAAATACATTCACTTCCTTCCCTGACTTGTATGTTCTCAATGTCTCTGGAAACAACCTCACCGGCTTGTTGCCCAATTCTGTTGTACGGTTACTCAAGCTACAACGGCTGGATCTCAGTAACCAAGCCCACCGTGACGGTGGGTTCTCTGGTACAATTGAATTTCTATCATTAATGACTCGCTTGAATTATGTGAATCTTGAGAGGAACTCATTCCAGGGTCCCATTCCTGACTTATCAAATTGCACCAACTTGACAAAACTGATTCTTCAGGACAACAAATTAACCGGTGAAGTTCCACCTTCTCTCATGAATCTCTCCAAACTGAAGCTCCTTTCATTGGATAAAAACTTGTTGCAGGGTCCTATGCCTGCATTCAAGAAGAATGTGAATGCTACTCTTGAAGGAAATGGGTTCTGTCTAAACCAACCTGGTCTCCATTGTGATGACAGAGTCACCACCTTGCTACAGGTTGCTGCTGGTTTTGGATATCCCTTTCAGTTGGCGCTGACGTGGCGTGGGAACAATCCCTGTAACGGTTGGAATTTCATCACGTGCAATATACAGGGCAATATCAGAACCGTTAACTTGACAAAGCTGAATCTCACTGGAATCATCTCACTGGCGTTTGCCAATTTAACGGATTTGCAAGAACTGTATCTCAGCTGGAATAATTTAAGCGGATCACTGCCTGGAATTTTGACCACTTTGTCACAACTCAAGATTCTTGATGTCTCCAACAACAATTTATCAGGGATCATTCCTAGATTCTCGCCCAAAGTCGCAATAAATACTTCAAATAATGCTTTCAGTAACCGTCATTCTCCATCTAGAACCACACTTCTTCTGATTAAATTAGGTGCTGGTGTTGTAGGGAGTATTGTTGGAGTTATAGTAATCTTTGAAGTAATTGTTTTTAACCGTGTGAGGCGTCTTAGCTTATTACACAAAATAATCTTGAGGAGAAAAAGAAAGAAGGCGGATCATTATGTTGAAAATCTCATTAGAAGTTATGATTCTTTGAGTCTTAAGCGATATACATACAAAGAAGTGAAAAAAATGACAAACTCTTTTCATAATAAATTAGGAGAAGGAGGATATGGTATCGTGTATAAAGCAAGTTTAGTTGATGGTCAACAGGTGGCTGTAAAAATATTGAAAGAGTCAAAGGGAAGTGTGGAAGAATTCATAGATGAGGTTTTTATCATTAGTAGAACATCTCATGTGAACATTGTTTTACTTTTGAAATTTTGTTATGAGAAGAATAAGCGAGCATTGGTCTATGAGTTTATGCATAATGACTCTTTAGATAAGTTTACCTGCAAAAAAAAGTCCTCCAATATTGTTTGTTGTTTGGATTGGAACACTTTGTATCAAATCTCAATTGGAGTTGCTCGAGGACTAGAGTATCTGCACCATGGATGTAATACAAGAATTCTGCATCTTGATATTAAACCACAAAATATTCTTTTGGATGAATATTTTTGTCCAAAGATCGCAGATTTTGGATTGGCTAAAATATGTAAGAAGGATCAAAGTATTGTATCTATACTTGGTACAAGAGGAACTCCAGGATATATTGCACCAGAAGTATTTAGCCGATCTTACGGTAGAGTTTCTCACAAATCTGATGTATATAGTTATCGTATGTTGATCCTTGAAATGATTGGACGAAGACATAACTATGAAATTGTAGAATCAAACAGCAGCGAAGAAATTTGCTTTCCAGATTTGATCTATGATGATCTTGAACAAGGCAATATCCTTGCAAGGTTTTATCTCCAGACAGAAGAAGAAAAGGATCTGGTATTGAAAATGATTCTAGTGAGCTTATGGTGTATTCAACCAAATCCATTAGATAGGCCCTCTATTAATAAAGTAATAGAGATGTTAGAAGGACCTATTGAGTCACTACCATATCCTCCAAAGCCAAATTTATTTTCTCCGGACAGACTTACCTCAAAATATTCAAATATATCTTCTAGCAATGAACTTTAG 2508 0.3951 MSQARLKSKTQTSDIASFIFFFFFLWQCVLSNNNNHNNQLVGEEAAYLLKLRDAISPAPPHWFNHTNMCEWTPHVTCNPVGEIRNVTEINLVGMSLKGQLPPGLNNSFPSLTTLNLYNNSLTGPLPSLAGLSNLEKVYLSRNNFTSLPHYDSFRGLFLSFAASNLIGSLPPNTFTSFPDLYVLNVSGNNLTGLLPNSVVRLLKLQRLDLSNQAHRDGGFSGTIEFLSLMTRLNYVNLERNSFQGPIPDLSNCTNLTKLILQDNKLTGEVPPSLMNLSKLKLLSLDKNLLQGPMPAFKKNVNATLEGNGFCLNQPGLHCDDRVTTLLQVAAGFGYPFQLALTWRGNNPCNGWNFITCNIQGNIRTVNLTKLNLTGIISLAFANLTDLQELYLSWNNLSGSLPGILTTLSQLKILDVSNNNLSGIIPRFSPKVAINTSNNAFSNRHSPSRTTLLLIKLGAGVVGSIVGVIVIFEVIVFNRVRRLSLLHKIILRRKRKKADHYVENLIRSYDSLSLKRYTYKEVKKMTNSFHNKLGEGGYGIVYKASLVDGQQVAVKILKESKGSVEEFIDEVFIISRTSHVNIVLLLKFCYEKNKRALVYEFMHNDSLDKFTCKKKSSNIVCCLDWNTLYQISIGVARGLEYLHHGCNTRILHLDIKPQNILLDEYFCPKIADFGLAKICKKDQSIVSILGTRGTPGYIAPEVFSRSYGRVSHKSDVYSYRMLILEMIGRRHNYEIVESNSSEEICFPDLIYDDLEQGNILARFYLQTEEEKDLVLKMILVSLWCIQPNPLDRPSINKVIEMLEGPIESLPYPPKPNLFSPDRLTSKYSNISSSNEL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30303g00005 835 Pfam Protein kinase domain 529 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00005 835 SMART LRR_typ_2 383 406 IPR003591 -
Stsc30303g00005 835 SMART LRR_typ_2 407 429 IPR003591 -
Stsc30303g00005 835 SMART LRR_typ_2 177 200 IPR003591 -
Stsc30303g00005 835 SMART LRR_typ_2 131 155 IPR003591 -
Stsc30303g00005 835 SMART LRR_typ_2 108 130 IPR003591 -
Stsc30303g00005 835 SUPERFAMILY Protein kinase-like (PK-like) 503 801 IPR011009 -
Stsc30303g00005 835 Pfam Leucine Rich Repeat 409 426 IPR001611 GO:0005515
Stsc30303g00005 835 Gene3D Transferase(Phosphotransferase) domain 1 601 808 - -
Stsc30303g00005 835 SUPERFAMILY L domain-like 78 426 - -
Stsc30303g00005 835 Gene3D Ribonuclease Inhibitor 41 314 IPR032675 -
Stsc30303g00005 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Stsc30303g00005 835 SMART serkin_6 526 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00005 835 PANTHER OSJNBA0070M12.3 PROTEIN 32 806 - -
Stsc30303g00005 835 Gene3D Phosphorylase Kinase; domain 1 501 600 - -
Stsc30303g00005 835 FunFam Leucine-rich repeat receptor-like kinase 320 444 - -
Stsc30303g00005 835 ProSiteProfiles Leucine-rich repeat profile. 133 154 IPR001611 GO:0005515
Stsc30303g00005 835 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524
Stsc30303g00005 835 FunFam PR5-like receptor kinase 601 811 - -
Stsc30303g00005 835 Gene3D Ribonuclease Inhibitor 319 443 IPR032675 -
Stsc30303g00005 835 ProSiteProfiles Protein kinase domain profile. 526 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30303g00005 835 ProSiteProfiles Leucine-rich repeat profile. 110 132 IPR001611 GO:0005515
Stsc30303g00005 835 Pfam Leucine rich repeat 163 211 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30303g00005 Stsc-Chr30303 15179 17932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30303g00005 454 835 Receptor kinase-like Gene Family AT5G38260 52.332 5.43e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30303g00005 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30303g00005 - K00924 aip:107635702 692.189