Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30302g00031 ATGAGGAAGCCGAATAATAGTAGTGAGCAATGCACTAATAAGTTGAGAAAAGGGTTGTGGTCACCGGAAGAAGATGAGAAGTTGATGAAATACATGATGAACAATGGACAAGGTTGTTGGAGTGATGTTGCTAAGAATGCTGGGCTTCAGAGGTGTGGTAAGAGTTGTCGCCTCAGATGGATCAATTATCTCAGACCTGACCTTAAACGAGGTGCATTCTCTTCCCACGAAGAGCAACTCATCATTCACTTCCACTCACTTCTTGGAAACAGATGGTCACAAATAGCTGCGCGTTTACCTGGAAGAACCGACAATGAAATCAAGAACTTTTGGAATTCAACTATCAAGAAAAGACTCAAGCAGCAGCACCAATCATCTCTCACTGCAACTTCACCAAATGCAAGCGATGATTCTTCATATGACCCTAATAATAACAATAACAGCAACAAAGACCTCAACATTATAGGAGGAGGAGGGTTTAATAGTAATTCCACAACACAACAATTTCATCAACATCATCTTCACTTTATGCCAGTAGTGTTCAATTCTTCATCTTCATCTTCATCATCATCAATGCAAAACACAGTTCTCAACACCATAATTGACAGGTTGCCTATGCTAGATCATACTCTAAACTTGCCACTACCTTCTTCTGCCAATAATAGTGGATTCAACAACAAAGGCTTTTATGAGTTGGAAAATCGTGTCATGATTGAGAATGTAGATAATAATAATAATAATAATGGTGCTGCAGAAGTAGTAATGGGGGATATGTTTGTTCCTCCTCTAGAGAGTGTTAGCACTAATACTAACACTTTTTCTGACCATGATAATAACCTAAAAGTGGTGGAGAGTCATGCATGCATTATTAATACTAATAATAATAGCCATATTAGTACTAATTACTTTGAGGACATAAACAGCATTGTTAATAACAGCTGCAATAACAGCAAGATCATGAAGGGTAGTGGTGGGGTGCTGGAAAATTTGTTTCATCAAGAGTTGACATTGGGAGAGTGGGACTTGGAAGAATTCATGAAAGATGTTACATCTTTTCCCTTTCTTGCTGATTTTTCAAATTGA 1083 0.3804 MRKPNNSSEQCTNKLRKGLWSPEEDEKLMKYMMNNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSSHEEQLIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKQQHQSSLTATSPNASDDSSYDPNNNNNSNKDLNIIGGGGFNSNSTTQQFHQHHLHFMPVVFNSSSSSSSSSMQNTVLNTIIDRLPMLDHTLNLPLPSSANNSGFNNKGFYELENRVMIENVDNNNNNNGAAEVVMGDMFVPPLESVSTNTNTFSDHDNNLKVVESHACIINTNNNSHISTNYFEDINSIVNNSCNNSKIMKGSGGVLENLFHQELTLGEWDLEEFMKDVTSFPFLADFSN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30302g00031 360 CDD SANT 72 112 IPR001005 -
Stsc30302g00031 360 SMART sant 16 66 IPR001005 -
Stsc30302g00031 360 SMART sant 69 117 IPR001005 -
Stsc30302g00031 360 Gene3D - 71 145 - -
Stsc30302g00031 360 FunFam Myb transcription factor 72 119 - -
Stsc30302g00031 360 MobiDBLite consensus disorder prediction 121 167 - -
Stsc30302g00031 360 Gene3D - 14 70 - -
Stsc30302g00031 360 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Stsc30302g00031 360 FunFam MYB transcription factor 14 70 - -
Stsc30302g00031 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Stsc30302g00031 360 PANTHER MYB DOMAIN PROTEIN 55 11 311 - -
Stsc30302g00031 360 CDD SANT 20 64 IPR001005 -
Stsc30302g00031 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Stsc30302g00031 360 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Stsc30302g00031 360 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Stsc30302g00031 360 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Stsc30302g00031 360 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30302g00031 Stsc-Chr30302 118824 121969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30302g00031 1 121 MYB Transcription Factor Family AT5G12870 81.452 2.87e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30302g00031 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30302g00031 K09422 - gmx:100786151 347.436