Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30302g00016 ATGGAGCTTGAAGAAGCTCCAGTCTTGGAAGCAGTTTCCCAGCTGGAAATTGAGATGCACAGTGTCTTTAAAGAACCTGGGGATCCTTCAACAACTATCAAGTTAGCTTGCAATTCTGTTTGCCCTTTTTCCAGGCAAGACAACAGTTTCGTAGCGTCCAGAGAGTCATCAAAATCAGCAAAGAAACTTTGTGGACTCATAGTATTCTATGCCATTGTTATGCTAGTGGAAGCAATTGGTGGAATAAAGGCTAACAGTCTAGCAGTCATCAGCGATGCGGCACACTTGCTTTCTGATATCGGCGGATTCTGCATATCTCTCTTTGCAGTATGGGCTTCTGGCTGGGATGCAACACCACATCAATCTTTCGGATATAATAGACTTGAGGTTTTGGCTGCTCTTTTATCTGTGCAGATAATTTGGGGGATATCTGGCTTTTTAGTATACGAAGCAATAGGACGACTTGTGCACCACAGCACCAGGGTGAATGGAATGCTCATGTTTGCAATTGCAGCATTTGGTTTTGTGTTTAACTTTATCATGGTTGTATGGCTTGGTCATGATCATAGTCATAGTCATGACCATCATCATGGTCACAATCATAGTCATAGTCATCATCATCATCATGATTGCAGACACTTGGATCATGATCATGATCATGGGAAGGAGGAACAAGCTAAAGTACCTGATGAAGAGGACCTTAATCTGCTTTCAAGTAGTCAGAGAAATGTTAATGCCTTGAACATAAATCTGCAAGGTGCCTATTTGCATGTGATCACAGATATGATTCAATCTATCGGAGTGATGATTGCTGGAGCCATAATATGGGCTAAACCAGAATGGTTGGTGGTTGATCTTATCTGTACACTCATATTCTCTGTTATATCTTTGGGAACTACCATGCCTATGCTTAAGAGTATTTGTGGCATTCTTATGGAGAGGACACCAAGTGAGATAAATGTCATGAAACTAGAAAATGACCTCAGAAGTTTGAAGGGAGTGCAGGGTATTCATGACCTGCACGTCTGGGCCATAACAGTTGGAAAAACTGTTCTATCTTGTCATGTAGTAGCTGAGTCTGGCGTAAATTCCATTGATTTAATTGGCAGGATCAGGGATCATTGTGAAAAAACATATAAAATACAACATGTAACCGTACAAATTGAGTGA 1170 0.4103 MELEEAPVLEAVSQLEIEMHSVFKEPGDPSTTIKLACNSVCPFSRQDNSFVASRESSKSAKKLCGLIVFYAIVMLVEAIGGIKANSLAVISDAAHLLSDIGGFCISLFAVWASGWDATPHQSFGYNRLEVLAALLSVQIIWGISGFLVYEAIGRLVHHSTRVNGMLMFAIAAFGFVFNFIMVVWLGHDHSHSHDHHHGHNHSHSHHHHHDCRHLDHDHDHGKEEQAKVPDEEDLNLLSSSQRNVNALNINLQGAYLHVITDMIQSIGVMIAGAIIWAKPEWLVVDLICTLIFSVISLGTTMPMLKSICGILMERTPSEINVMKLENDLRSLKGVQGIHDLHVWAITVGKTVLSCHVVAESGVNSIDLIGRIRDHCEKTYKIQHVTVQIE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30302g00016 389 NCBIfam cation diffusion facilitator family transporter 61 389 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc30302g00016 389 SUPERFAMILY Cation efflux protein transmembrane domain-like 60 313 IPR027469 -
Stsc30302g00016 389 MobiDBLite consensus disorder prediction 212 231 - -
Stsc30302g00016 389 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 24 389 - -
Stsc30302g00016 389 MobiDBLite consensus disorder prediction 194 211 - -
Stsc30302g00016 389 Gene3D Cation efflux protein transmembrane domain 59 311 IPR027469 -
Stsc30302g00016 389 MobiDBLite consensus disorder prediction 194 232 - -
Stsc30302g00016 389 Pfam Cation efflux family 67 312 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Stsc30302g00016 389 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 389 IPR036837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30302g00016 Stsc-Chr30302 57340 59616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30302g00016 1 389 Inorganic Solute Cotransporters AT2G29410 47.815 2.02e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30302g00016 K14689 - gmx:100777590 492.656