Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30302g00009 ATGGAGAAGGCATCAGATGATGATCAAGATCATAGAAGAAGAAGCAGTGATGGAGGGGATGAAGAAGTACAAGCTGCAGTGAATGTGAATCATCCAACAACAAGATCATATGAATGCAATTTCTGCAAGAGAGGCTTCTCTAATGCACAAGCACTTGGAGGTCACATGAATCTTCATAGGAAGGACAAAGCAAAGATCAAAGAGCAGCAACAACAACAATATTCTTCTTCTTCCTCTTCTACTTCAAATCAACAATTTTTATTGGAGGGCAATCTCGGTCATATTAAAGAGCTTGGGAATGTGCCTCATCATCAGGCACTTATGGAAGATGAAACCAATAATAATAATGTTGTGATGATGAGGCAGCAGTTACCACTCTTTGCAGAATCATCACCTCATCATCTTCAACAGCAAGAGGAGGATCAAATTTCTGGTCCGGAATTAGACCTTGAACTAAGATTAGGGCCTGAGCCGCCACAAGGATCATCTTCACCATCAGCTACAACAACGGGTACTAGAAAATTCTTTTGA 531 0.4068 MEKASDDDQDHRRRSSDGGDEEVQAAVNVNHPTTRSYECNFCKRGFSNAQALGGHMNLHRKDKAKIKEQQQQQYSSSSSSTSNQQFLLEGNLGHIKELGNVPHHQALMEDETNNNNVVMMRQQLPLFAESSPHHLQQQEEDQISGPELDLELRLGPEPPQGSSSPSATTTGTRKFF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 159 176 - -
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 69 84 - -
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 62 84 - -
Stsc30302g00009 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Stsc30302g00009 176 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 131 176 - -
Stsc30302g00009 176 Gene3D Classic Zinc Finger 13 91 - -
Stsc30302g00009 176 SUPERFAMILY beta-beta-alpha zinc fingers 34 64 IPR036236 -
Stsc30302g00009 176 Pfam C2H2-type zinc finger 37 61 - -
Stsc30302g00009 176 PANTHER OS07G0101800 PROTEIN 21 158 - -
Stsc30302g00009 176 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30302g00009 Stsc-Chr30302 37656 38186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30302g00009 37 155 C2H2 Transcription Factor Family AT5G43540 35.294 5.13e-17 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30302g00009 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30302g00009 - - adu:107477079 189.889