Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30302g00002 ATGGGTGAGGAAGTTAGGACCACCGACTACCAAGACGACGAGCATCTCGCAGACTGGGAATTGGGCCTTCCTGCGGCCCACGATCTCCCCCCCCTCTCTCAGCTCTTGATCCCGCCAGAGCTTGCCTCCGCCTTCAGCATCTCGCCGGAGCCACACCGTTCCCTCGTCGACGTCAACCGCGCCTCCAAGAACACTCTCTCCACCCTCCGTACCGGCGTCAACGCTTTCTCCTCCTCCAACCTCAACCCCTTCCAAGACGAAGGAAACGATCCTGCCGGCGACGACGACGAAGAGATCGATCCGAACGGTTCGGGCTCCAATTCGAGGAAGCTCCGTAAGATCGATTGTGCGGAGGAGGCGGATTCGGCGCCGCGCAACGACGGTGCCGCAGCCGTGAAGCGACCGAGGCTGGTGTGGACGCCGCAGCTGCACAAGCGGTTTGTGGACGTGGTGGCGCACCTAGGGATCAAGAACGCGGTGCCGAAGACGATCATGCAGCTTATGAACGTGGAAGGGTTGACCAGAGAGAACGTGGCCAGCCACCTCCAGAAGTATCGCCTCTACCTTAAGCGGATGCAAGGTCTCTCCACCGACGGACCTTCTTCCTCCGACCACCTCTTCGCCTCCACGCCAGTGCCTCAAAGCCTCAACGACAGCAGCGGAGGCGGAGGAGGAGGTGGAAGTGGCCACTCCCGGGGGAACGGGCACCTTCCGGTTCCGGTCCCGATGCATTATCCTCCGGCGGCGATGATGCAAATGCCGATGCTAGGCATGGCACATGGCTATCATCATCATCACCACGTGTTGCAGCAGAGGGATTGGTCCTACCAACCTCATGTCACTCCTAATGATAAATGA 858 0.6026 MGEEVRTTDYQDDEHLADWELGLPAAHDLPPLSQLLIPPELASAFSISPEPHRSLVDVNRASKNTLSTLRTGVNAFSSSNLNPFQDEGNDPAGDDDEEIDPNGSGSNSRKLRKIDCAEEADSAPRNDGAAAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSTDGPSSSDHLFASTPVPQSLNDSSGGGGGGGSGHSRGNGHLPVPVPMHYPPAAMMQMPMLGMAHGYHHHHHVLQQRDWSYQPHVTPNDK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30302g00002 285 Pfam Myb-like DNA-binding domain 138 186 IPR001005 -
Stsc30302g00002 285 FunFam Two-component response regulator 130 193 - -
Stsc30302g00002 285 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 270 IPR044841 GO:0003700|GO:0006355
Stsc30302g00002 285 Gene3D - 131 193 - -
Stsc30302g00002 285 SUPERFAMILY Homeodomain-like 132 191 IPR009057 -
Stsc30302g00002 285 MobiDBLite consensus disorder prediction 77 112 - -
Stsc30302g00002 285 MobiDBLite consensus disorder prediction 196 224 - -
Stsc30302g00002 285 NCBIfam myb-like DNA-binding domain, SHAQKYF class 135 187 IPR006447 GO:0003677
Stsc30302g00002 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 190 IPR017930 -
Stsc30302g00002 285 MobiDBLite consensus disorder prediction 196 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30302g00002 Stsc-Chr30302 9218 11019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30302g00002 1 267 G2-like Transcription Factor Family AT3G46640 54.255 1.61e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc30302g00002 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30302g00002 - - aprc:113858844 366.696