Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00022 ATGCAGAATTTCCAAGTTTCCTTTTATAAAAAACATTTTAAAGATGATGAGCAGGATATACAGATAAGGTTTGAGAGGGAGTTGTTGCCTGCAAAGGTTTGCTATCATCAACATAATTCTCTTGCCATTATCTCTGCTGGTTGGCGCCTTTTTGCTCTAACAAGTAAATTACAACCCGGGGATGTTACTGTCTTTGAGCTCATCAATAGAGAAGATCCATTGTTCGACGTTCATATTTATAGAGCTCACGAGCAAGCCTTGGAGCCTAGGACCGGTGAGTTTCGACCTCAGATAGAAGCTCAGAAGTTCAGCTCAGAAAATCCCTTTTTCATGGTCAAGATAATGCATGATAACCTATTGAGATCAAGGACGTCCATACCAAATGCCTTCTTCACCAAGTATTTTAAAAAGAAAGAGCCAAATGTAAAGATACAGTTTGAAAACAAGTTGTGGCCTGCAAAGTTGCTCTATTATCCATCATTGTCTAACGCCTATATCTCCAGTGGTTGGCAGCATTTTATTCTTGCCAGTAATTTAAAAGCAGGAGATGTTTGTGTCTTTGAGCTCATCAAAGTAGAAGAACGGGTGCTTGATGTTCATATTTATAGAGCTGATGGTTAG 621 0.3913 MQNFQVSFYKKHFKDDEQDIQIRFERELLPAKVCYHQHNSLAIISAGWRLFALTSKLQPGDVTVFELINREDPLFDVHIYRAHEQALEPRTGEFRPQIEAQKFSSENPFFMVKIMHDNLLRSRTSIPNAFFTKYFKKKEPNVKIQFENKLWPAKLLYYPSLSNAYISSGWQHFILASNLKAGDVCVFELIKVEERVLDVHIYRADG 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00022 206 CDD B3_DNA 108 203 IPR003340 GO:0003677
Stsc30300g00022 206 CDD B3_DNA 6 81 IPR003340 GO:0003677
Stsc30300g00022 206 ProSiteProfiles B3 DNA-binding domain profile. 1 83 IPR003340 GO:0003677
Stsc30300g00022 206 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 99 205 IPR044837 -
Stsc30300g00022 206 Gene3D - 1 85 IPR015300 -
Stsc30300g00022 206 Gene3D - 95 205 IPR015300 -
Stsc30300g00022 206 SUPERFAMILY DNA-binding pseudobarrel domain 103 205 IPR015300 -
Stsc30300g00022 206 ProSiteProfiles B3 DNA-binding domain profile. 109 205 IPR003340 GO:0003677
Stsc30300g00022 206 Pfam B3 DNA binding domain 109 204 IPR003340 GO:0003677
Stsc30300g00022 206 SUPERFAMILY DNA-binding pseudobarrel domain 7 83 IPR015300 -
Stsc30300g00022 206 SMART B3_2 109 205 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00022 Stsc-Chr30300 107660 108532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30300g00022 100 205 B3 DNA Binding Superfamily AT3G18990 37.383 1.27e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30300g00022 B3 3.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00022 - - adu:107471605 224.172