Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00021 ATGGCTTCTTCTGTGATCCGTTTCTTCAAGATTGTTCTCACAAAAAGCCTTCAAGATGGAACTCTTAAGTTACCAAAAAAGTTTTGTAAGAAATATGGTGATGGTGTGCCAAATCCAGCGTATCTGAAGCCTCCAGATGGTACTGAATGGAAAATAGATTGGACTAAGAAAGACGGTGAAATTCTATTTGAAAAGGGTTGGAAAGAGCTTGCAACATATTACTCTCTGGATAATGGCCATTTGTTGTGGTTTGAGTATGATGGAACTTCCAAAATTGAAGTACACATATTTGACATGAGTGGCCTTGAAATAGACTATACTTCCAATGACAACTCAGTTGGGATCTCGAAGAAACAGCAACGGCTAAAGGAAAAAATGAAAGCAGAACCAGAGGCATCATCTCCTTCTAGAGATAAAAGATTGAAACGTACCGCCGAAACTACGGATGAGGAAGGAATCCTCGATACACAAAAGTGGAAGCAAAATGGCAATAATGAAGAGACACAGCTTAAGATGCCAACAAAACGATGTAAAAGGCCATATGTGGATGATGTTTTCTGTCTTGGGACCAAGGGGTTTGAAGCTCTGATTGAAGCTAAGAGGTTCAAGTCAGAAAATCCCTCTTTCATAGTCAAGATAACGAAAGCTAATATATCAGCATGA 663 0.3922 MASSVIRFFKIVLTKSLQDGTLKLPKKFCKKYGDGVPNPAYLKPPDGTEWKIDWTKKDGEILFEKGWKELATYYSLDNGHLLWFEYDGTSKIEVHIFDMSGLEIDYTSNDNSVGISKKQQRLKEKMKAEPEASSPSRDKRLKRTAETTDEEGILDTQKWKQNGNNEETQLKMPTKRCKRPYVDDVFCLGTKGFEALIEAKRFKSENPSFIVKITKANISA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00021 220 SMART B3_2 8 100 IPR003340 GO:0003677
Stsc30300g00021 220 MobiDBLite consensus disorder prediction 117 156 - -
Stsc30300g00021 220 Pfam B3 DNA binding domain 8 98 IPR003340 GO:0003677
Stsc30300g00021 220 MobiDBLite consensus disorder prediction 115 167 - -
Stsc30300g00021 220 CDD B3_DNA 7 98 IPR003340 GO:0003677
Stsc30300g00021 220 Gene3D - 3 101 IPR015300 -
Stsc30300g00021 220 ProSiteProfiles B3 DNA-binding domain profile. 7 100 IPR003340 GO:0003677
Stsc30300g00021 220 PANTHER B3 DOMAIN-CONTAINING 6 163 - -
Stsc30300g00021 220 SUPERFAMILY DNA-binding pseudobarrel domain 6 100 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00021 Stsc-Chr30300 106198 107568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30300g00021 8 129 B3 DNA Binding Superfamily AT3G18990 35.484 1.92e-20 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30300g00021 B3 1.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00021 - - adu:107471605 251.521