Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00020 ATGGCAACCGCAACCAGAAGATCCAAGCGTAAGCTTCATCTTGAACCACCACCACCAAAAATCACATGCAAGAAGCTTCGGTCAAACCTCCCTCGCCGCCGACGGTGTCAGATCTCACCGCTGGTTATTTCTTCCACTAGATTCAATTCTTCCAGAGAAAATCCTCGTTTTCCTGGAATAACTGTGGATTCTGATTCTTGCTCTGACGACTTCGCCGGAGGCGAAGCTTCGTGTAACTCGAGCAGAGCTTCAGCTGTTTTCGCCGGAAATGGAGGATGTTCCAAATCAAGAGGAAGATTGCAATGCGAAATCTCGAGAAATAGGAGATTCAGGAAGCAAAATGAAAGTGAAGTCTCGGAGTCTTCGTGTGTGGACTCCAACGACAGAGGTCACGAACAGAGCAGGAGCTTGATTCTTCAAAGAAAGCTTATGGAATCCGATGAGGTGATTTTGAAGTTCAGAAGCGAAAATGAGAGACGAAACGATGAATTCTCCGAAGCATGCACGAAATCTGAGATCACTTGTGAGGATTCGAAGTCCGGTTGCCGAAATTTGAAAGCGTCGTCGGAAACGAAGAAGAGAAACGACGTCGTTTCGTTTAGCTCCTCTGGTGCTCGTACGACGGCGTTTAAGGAGGGAAAGAGCATATCAATCTGCAAGATAAACAGAGAATCGGAATTAGAATTCTCTGAATGTTCGAGAAACCTCCGCGAGGATGACAGTAACTTTGTTGATTTGACAGAAAAATCGAAGATCAATCAAAGTACAAATAGCTCCTATCTCAATTGCACGGAGCAATTGCGATTCACATATTCCGACGAAGACGAAGACGAAGACGTAGAAGACGATGAATCGGAGTACTATTCTAGTCAGGGAACTGTGCTATCTGATCTTCGCTCAGAGATCTTCAGCTTCCCGGAGTGCTCAGAACTTGAACTTTCTGATTACACTCCGTCGTTATTCATCGATTCAGGAAGCCAATTCTCGCAGGGATCCGTCGGAGAAACTCCTTCTCCAACTTACTCCTTGTTTCTTCAGTTCCGTAACGAGTTCAACACGCTAATTATAACTTCATTCAACAATAATTCTTCAAGCGTCAAAGATGAGGTCGTTCCTATTCATGCCAAGTTTGTTAAGTTCGATGATTTGGCCGAAGAAGAAAGCTACGTGATGCTGAGAGAGAGGGAGAGGAAGCAAGTTCTTCTGTGGAATTATACAGATAGCTATTTTTCTACCACTGAATTCGGGAACCTTGTGATTCAGCAACGCTCGCAAATGGTTCAATGGATCATTGAGCAATCTTATCGAAAGCAGCTTCGGCAAGAGACGATGTTTCTTGGAGTCAGCCTCCTTGACCGCTTCTTAAGCAAAGGATATTTTAAAGTCAAGAGAAACCTTCAGATTGCTGGGATCGCCTGCCTGACGTTAGCCACGAGGATCGAAGAAAACCAGCAATATAGCAGAGTGGAGCAAAAGAATTTCTGTATTGGAAGTAATGTATACAGTAGATGCGAGGTGGTGGCTATGGAATGGGTGGTGCAGGAAGTGCTCAAGTTCCAGTGTTTCGTTCCGACCATCTACAACTTCTTGTGGTTCTACCTAAAGGCTGCTAAAGCTGATGCAGCTGTGGAGAGGAGGGTCAAGTCGCTGGCAGTGCTGGTACTATCAGCTGAGGAGCAGCTATGTTACTGGCCCTCTACAGTTGCTGCAGCAATTGTAATCCTGGCTTCTCTCGAAGTCGATCAAAATGCCTTCCACGCGGTCATAGGGGTCCACGTAAGATCAAAAGATGAGAATTTGCATGAATGCATGGAGATGTTGACTTCGAAAAACTTGTCCTTTAAGACTGATTACTATTCATTTGGTTCAGCAGAGACATTTTTTACTTCATTTTATTGTTCTGATCTCATCAGTGTTATCTTTTCCTTGTTGAGTGCCATGGAAAGGATACTCTATTTCAAGGCCACTCATGTCACATATTTGCACACCAAATTGGGAATTTCCATTGAGCTCAAACAACAGATTTCCATTACACAGGGTTTGACAGAGCAACACAATGTTTCCTAG 2067 0.4436 MATATRRSKRKLHLEPPPPKITCKKLRSNLPRRRRCQISPLVISSTRFNSSRENPRFPGITVDSDSCSDDFAGGEASCNSSRASAVFAGNGGCSKSRGRLQCEISRNRRFRKQNESEVSESSCVDSNDRGHEQSRSLILQRKLMESDEVILKFRSENERRNDEFSEACTKSEITCEDSKSGCRNLKASSETKKRNDVVSFSSSGARTTAFKEGKSISICKINRESELEFSECSRNLREDDSNFVDLTEKSKINQSTNSSYLNCTEQLRFTYSDEDEDEDVEDDESEYYSSQGTVLSDLRSEIFSFPECSELELSDYTPSLFIDSGSQFSQGSVGETPSPTYSLFLQFRNEFNTLIITSFNNNSSSVKDEVVPIHAKFVKFDDLAEEESYVMLRERERKQVLLWNYTDSYFSTTEFGNLVIQQRSQMVQWIIEQSYRKQLRQETMFLGVSLLDRFLSKGYFKVKRNLQIAGIACLTLATRIEENQQYSRVEQKNFCIGSNVYSRCEVVAMEWVVQEVLKFQCFVPTIYNFLWFYLKAAKADAAVERRVKSLAVLVLSAEEQLCYWPSTVAAAIVILASLEVDQNAFHAVIGVHVRSKDENLHECMEMLTSKNLSFKTDYYSFGSAETFFTSFYCSDLISVIFSLLSAMERILYFKATHVTYLHTKLGISIELKQQISITQGLTEQHNVS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00020 688 PANTHER CYCLINS 359 611 IPR039361 -
Stsc30300g00020 688 Gene3D - 401 515 - -
Stsc30300g00020 688 MobiDBLite consensus disorder prediction 111 131 - -
Stsc30300g00020 688 CDD CYCLIN_SDS-like_rpt2 524 607 - -
Stsc30300g00020 688 ProSitePatterns Cyclins signature. 423 454 IPR006671 -
Stsc30300g00020 688 Pfam Cyclin, C-terminal domain 524 608 IPR004367 -
Stsc30300g00020 688 Pfam Cyclin, N-terminal domain 418 520 IPR006671 -
Stsc30300g00020 688 Gene3D - 516 621 - -
Stsc30300g00020 688 MobiDBLite consensus disorder prediction 1 24 - -
Stsc30300g00020 688 SUPERFAMILY Cyclin-like 523 614 IPR036915 -
Stsc30300g00020 688 SMART cyclin_7 428 515 IPR013763 -
Stsc30300g00020 688 SUPERFAMILY Cyclin-like 384 520 IPR036915 -
Stsc30300g00020 688 SMART Cyclin_C_2 524 635 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00020 Stsc-Chr30300 100141 105772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30300g00020 423 583 Core Cell Cycle Gene Families AT5G25380 36.527 4.52e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00020 K21777 - gmx:100817658 610.912