Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00008 ATGAGCACCTTTTTCCAACTCTTGTTCCTCCCAATTCTATTCCTATTCCTTCCAATCCTAAACACAGTCTTATCACAACCAGAACAACTCTTCTATTCTGGATTCAATCATATTCCTGGAACCAACTTATCCCTGAATGGAACAGCACAAATTGATGAACCAAACGGGATCTTGAAGCTCACAAATGAAACAACTAGATTAATGGGACATGCCTTTTACCCCATCCCATTTCAGTTCAAGAAGAAGAACAATGGCAGCAGAAGAACCTTCTCATTCTCTTCATCATTTGCAATAGCCATTGTTCCTCAGTACCCAAAGCTAGGTGGTCATGGCATGGCTTTCACCATTTCACCTTCCATGGATGTTCTTAACCATGCCCTTCCAAGCCAGTATCTTGGCCTACTCAACTCAACTAACATAGGAAACTTCTCCAACCACCTTTTCGCCATCGAATTCGACACCGTCCAAGACTTCGAATTCGGGGACATAAATGATAACCATGTTGGGATAAACATCAACAACTTGGTCTCCAATGTTTCTTGCAATGCAAGTTACTATCCTCCCGGGGAAGGCGAACCGAAACTCGAAGATCTAAACCTTAAGAGTGGTAAACCAATCCTAGTTTGGGTTGATTATGATTCAGTTAAGAGTGTGATAAGTGTTACACTCTCTCCTTCTTCTACTAAACCCAAGAAACCAACTCTGTCATATTCATTGGATCTCTCACCAATATTTCATGAGAGAATGTATGTTGGATTCTCTGCTTCAACTGGTTTGCTTGCTAGCTCCCATTATGTCTTGGGTTGGAGCTTCAAGATCAATGGACCTGCTCCACCACTTGATCTTGATTCACTTCCAAAGCTTCCTGGTCCAAAGAAGAAGCAAACTCCCATGGTTCTTGGGGTTTCAGTTACTGCTTCATTCATTGCTCTGTCTGCTATCTTTCTTGGATTTCACTTGTTCAGGAAAATCAAGAATGCTGATGTTATAGAGCCTTGGGAGCTTGAGATTGGGCCTCACAGGTACTCATACAAAGAGCTGAAGAAAGCTACAAAGGGCTTCAAAGACAAGGAGCTACTTGGCCAAGGAGGATTTGGAAGAGTCTATAAAGCAACTCTGCCAAATTGCAAGAGCCAAGTAGCTGTGAAGAGAGTATCACATGAGTCAAAACAAGGCCTTAGAGAATTCTTGTCTGAAATCGCCAGCATCGGCCGGCTTCGCCACCGGAACTTAGTTCAATTGCTCGGCTGGTGTCGCCGGCGCGGCGACCTCCTACTTGTGTATGACTTCATGGCAAATGGTAGCCTAGACAAGTACTTATTCGACGAGCCGAAAAGAATACTAAGTTGGGAACAAAGGCTTGGAGATTTTGGTTTAGCAAGATTGTATGAACATGGTGGTAACCCTAGCACAACAAGGGTGGTTGGAACATTAGGCTATTTGGCACCTGAATTGCCAAGAACAGGAAAAGCTACTCCTAGCACTGATGTTTATGCATTTGGAGCATTGCTTCTTGAAGTGGCATGTGGAGTTAGGCCTGTTGATCCAAGAAAGGCACAACATCATGAGGATTTGATCCTGGTGGATTGGGTTTGGAAGAGGTACAAAGAAGGGAAGCTAATTGATGTTGTGGACACAAAATTGAATGGTGATTTTGATGAGAGGGAAGCTGTTATGGTTCTGAAATTAGGGCTAATGTGTTCAAATTTTGCAGCAGCTGCTAGGCCTAGCATGAGGCAAGTGATTAGGTATTTGGATGGTGAAAATTTGTTGCCTGATTCATTGTTGAAGCCTCATCATAATAATAACCAAGAGGGGTTTGATGAGTTGTTGAATTCACTTGAGTATTCTTCTTTTATTAGGATGGATCATAATAGTTCAGATAATATTGGCATGTATACTAATTTTCCTTCATTCACTAATTCACCTGTTTTTAATCCTAGTGGTATGAGAGTAACAAGGTGA 1965 0.4219 MSTFFQLLFLPILFLFLPILNTVLSQPEQLFYSGFNHIPGTNLSLNGTAQIDEPNGILKLTNETTRLMGHAFYPIPFQFKKKNNGSRRTFSFSSSFAIAIVPQYPKLGGHGMAFTISPSMDVLNHALPSQYLGLLNSTNIGNFSNHLFAIEFDTVQDFEFGDINDNHVGININNLVSNVSCNASYYPPGEGEPKLEDLNLKSGKPILVWVDYDSVKSVISVTLSPSSTKPKKPTLSYSLDLSPIFHERMYVGFSASTGLLASSHYVLGWSFKINGPAPPLDLDSLPKLPGPKKKQTPMVLGVSVTASFIALSAIFLGFHLFRKIKNADVIEPWELEIGPHRYSYKELKKATKGFKDKELLGQGGFGRVYKATLPNCKSQVAVKRVSHESKQGLREFLSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPKRILSWEQRLGDFGLARLYEHGGNPSTTRVVGTLGYLAPELPRTGKATPSTDVYAFGALLLEVACGVRPVDPRKAQHHEDLILVDWVWKRYKEGKLIDVVDTKLNGDFDEREAVMVLKLGLMCSNFAAAARPSMRQVIRYLDGENLLPDSLLKPHHNNNQEGFDELLNSLEYSSFIRMDHNSSDNIGMYTNFPSFTNSPVFNPSGMRVTR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00008 654 FunFam Lectin-domain containing receptor kinase A4.3 449 602 - -
Stsc30300g00008 654 CDD lectin_legume_LecRK_Arcelin_ConA 32 275 IPR001220 GO:0030246
Stsc30300g00008 654 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Stsc30300g00008 654 Pfam Protein tyrosine and serine/threonine kinase 357 452 IPR001245 GO:0004672|GO:0006468
Stsc30300g00008 654 Gene3D Transferase(Phosphotransferase) domain 1 440 593 - -
Stsc30300g00008 654 FunFam L-type lectin-domain containing receptor kinase S.4 26 279 - -
Stsc30300g00008 654 Gene3D - 30 277 - -
Stsc30300g00008 654 Pfam Legume lectin domain 31 285 IPR001220 GO:0030246
Stsc30300g00008 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 293 IPR013320 -
Stsc30300g00008 654 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Stsc30300g00008 654 PANTHER - 46 453 - -
Stsc30300g00008 654 ProSiteProfiles Protein kinase domain profile. 354 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30300g00008 654 SUPERFAMILY Protein kinase-like (PK-like) 336 615 IPR011009 -
Stsc30300g00008 654 FunFam L-type lectin-domain containing receptor kinase S.1 339 430 - -
Stsc30300g00008 654 Pfam Protein kinase domain 453 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00008 Stsc-Chr30300 37789 40186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30300g00008 42 649 Receptor kinase-like Gene Family AT3G55550 52.352 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc30300g00008 Lectin_legB 9e-74 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00008 - - aip:107621816 971.844