Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00007 ATGGAGAAAACTCCAGGGATTGCAGAAGCTGATAAGCCACTATCTTCACCTTCACTACCAGATTCACCTTGGCCACCGACTTCACCAGATTCACCTTGGCCACCAGATTCACCTTCGCCACCTGATGTGGTGGCTGATATGGAAACGGCACAAGAGCCTCCTACAGAGCTTTCTATTATCAGTAAGAAGGGGTTTGGGACCATGGGAAAACGGATACAATTGCTTGCCAATCACTTCAAAGTTGATGTTACTGATCCAGATGCAATGTTTTTCCAATATAGTGTTGCTATTACTACAGAAGATAAAAGAACTGTTGAAGGCAAGGGCATTGGGAGAAAATTGATTGATAGGCTTTACCAAACATACTCATCTGAACTTGGAGGCAAAAGGTTTTCCTATGATGGAGACAGAACTTTGTATACAGTCGGTCCTTTGCCATTTGATAAGTTTGAGTTCAAAGTATTGCTTGAGGAATCATTTGCGAAGCACCCTGGTGCTGATAATCCCAGTGCCAATGGAAGCCCTCGTGAAGAAACCAAAAGATCAAAACATTCTTTTCAGTCAAAGGCATTCATAGTGGAGATAAGTTTTGCTGTCGAAATACCCCTGAGGTCCATTGCTCTTCCCCTAGAAGAGGTTGAGTCAGATGCTAACTATCAGGATGCTTTGAGAGTGCTTGATATCACACTGAGGCAGCAAGCAGCTAATAGAGGGTGTCTCTTGGTACGACAATCTTTTTTTCAAGATGATGCAAGGAACTTCAGTGAGATTGGAGGCGATTTGATGAGAGTTCGTGGTTTTCATTCTAGTTTTCGTCCAACACTGGGTGGATTGTCTCTCAATATGGATGTATCCACAACAGTGGTCTTAAAGCCTGGACCAGTAATTGAGTTTCTTCTTCATAACCAGAATGTAACGGAAGCCCGTTATATTGACTGGGCAAAGGCAAAAAAGGTGCTTAAAAATTTAAGGGTGCATGCAAGACATCGTAACCAGGAATTTAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCACCAACTTTTTACCATGAAGGTGAGAAATGGTGATGAGAATAATCAAGGGGAGACGGTCAATATCACTGTATATGAGTATTTTGCTAAACACCACGGCTTGAAGCTGACTTTTTCTGCTTATCTTCCATGCCTTGATGTTGGGAAGCCAAATCGGCCTATTTATCTGCCTCTGGAGCTGTGTTGTCTTGTTTCCCTCCAGCGGTACACAAAGGCATTAGCTCCAATGCAGAAAGCATCTTTAATTGAAAAATCACGCGAAAAACCTCAAGACAGGATTAAGACTCTGACAAATGCTGTAGGAAATAATTCCTACGATGATGACCCTGTACTTGCTGCATGTGGAATTTCTATTGAGAAGAAATTGGCTCAGGTTGAAGGTCGTGTTCTTGACCCACCGAAGTTGAAGGTTGGAAAGAATGATGATTGCTTCCCTAATAATGGAAGGTGGAGTTTCAATAAAAAGACACTTCTACAACCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCGCGTTGTGATACCAGTTACGTATCGAGGGAGCTGATCAAATGTGGAATGAGCAAGGGCATTAACATTGAACGCCCTTATACTTTAATAGAAGAAGAACCACTGATGAAAAAATCTAGCGTTGTTGCAAGGGTTGAAAAGATGTTTGAACGGCTTACGTCAAAGCTGACAAGAGAACCACAGTTAATTCTGTGTGTCTTACCAGAGAAGAAACATTGTGAAATTTATGGGCCTTGGAAAAAAAAGTGTCTGAGTGATGTTGGTGTTGTCACACAGTGCATTTGCCCTCTCAAGATCACTGATCAATATCTTACAAATGTACTTCTTAAAATCAATTCCAAGCTTGGAGGAGTAAATTCTTTGCTGGCAATAGAGCATTCTGGGCATCTACCCCTGATTAAAGATACCCCAACAATGATTTTGGGAATGGATGTCTCTCATGGTCCCCCTGGTTCAAATCATCCGTCAATAGCAGCAGTTGCTGGATCACGATGTTGGCCACTGATTTCAAGGTATAGAGCATCTGCAAGAACACAGTCATCTAAGGAGGAGATGATTGATGCCTTGTGCAAGCCTTTGGATGAAGGGAATGATAATGGTATTATCAGAGAACTGCTTCTAGATTTCTACGAATCAAGTGATAAATGTAAACCATTCCAAATTATCGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAATCAGGTTTTGAATGTTGAGCTTAGCCAGATAAAAAAGGCGTATGAACTTCTCGAGGCTGTCATTATTCCCAAGTTCACGGTAATTGTGGCGCAGAAGAATCATCATACGAAGCTGTTTCTACCTAATAGTACAGAAAACGTTCCTCCTGGGACTGTTGTTGACACCAAAATCACACATCCAAGGAATTATGATTTCTACATGTGTGCTCATTCAGTGATCCATGGAACATCCAAGCCTGTGCATTATCATGTGTTGCTTGACGAGATTGGTTTCTCAGTTGACGGTTTACAGAATTTGATCCATTCGCTGTCTTATGTGAACCAAAGGAGTACAACTGCAACCTCAGTTGTGGCACCAATATGCTATGCCCACCATGCTGCAGCTCAGATGGGGCAAATGTTGAATTTTGATGATTTGTCAGAAAAATCTTCAGATGTTACTTCAGAGGGAAACATTCCCATGCCAGAGCTTCCAAGGTTGCATAGGAATGTCAAGAGTAGCATGTTCTTCTGCTGA 2769 0.4171 MEKTPGIAEADKPLSSPSLPDSPWPPTSPDSPWPPDSPSPPDVVADMETAQEPPTELSIISKKGFGTMGKRIQLLANHFKVDVTDPDAMFFQYSVAITTEDKRTVEGKGIGRKLIDRLYQTYSSELGGKRFSYDGDRTLYTVGPLPFDKFEFKVLLEESFAKHPGADNPSANGSPREETKRSKHSFQSKAFIVEISFAVEIPLRSIALPLEEVESDANYQDALRVLDITLRQQAANRGCLLVRQSFFQDDARNFSEIGGDLMRVRGFHSSFRPTLGGLSLNMDVSTTVVLKPGPVIEFLLHNQNVTEARYIDWAKAKKVLKNLRVHARHRNQEFKISGLSEKPCIHQLFTMKVRNGDENNQGETVNITVYEYFAKHHGLKLTFSAYLPCLDVGKPNRPIYLPLELCCLVSLQRYTKALAPMQKASLIEKSREKPQDRIKTLTNAVGNNSYDDDPVLAACGISIEKKLAQVEGRVLDPPKLKVGKNDDCFPNNGRWSFNKKTLLQPSHIDYWAVVNFSARCDTSYVSRELIKCGMSKGINIERPYTLIEEEPLMKKSSVVARVEKMFERLTSKLTREPQLILCVLPEKKHCEIYGPWKKKCLSDVGVVTQCICPLKITDQYLTNVLLKINSKLGGVNSLLAIEHSGHLPLIKDTPTMILGMDVSHGPPGSNHPSIAAVAGSRCWPLISRYRASARTQSSKEEMIDALCKPLDEGNDNGIIRELLLDFYESSDKCKPFQIIVFRDGVSESQFNQVLNVELSQIKKAYELLEAVIIPKFTVIVAQKNHHTKLFLPNSTENVPPGTVVDTKITHPRNYDFYMCAHSVIHGTSKPVHYHVLLDEIGFSVDGLQNLIHSLSYVNQRSTTATSVVAPICYAHHAAAQMGQMLNFDDLSEKSSDVTSEGNIPMPELPRLHRNVKSSMFFC 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00007 922 Pfam N-terminal domain of argonaute 70 230 IPR032474 -
Stsc30300g00007 922 Gene3D - 646 922 IPR036397 GO:0003676
Stsc30300g00007 922 MobiDBLite consensus disorder prediction 1 54 - -
Stsc30300g00007 922 Pfam Piwi domain 579 885 IPR003165 GO:0003676
Stsc30300g00007 922 SUPERFAMILY PAZ domain 287 450 IPR036085 GO:0005515
Stsc30300g00007 922 Pfam Argonaute linker 1 domain 242 289 IPR014811 -
Stsc30300g00007 922 MobiDBLite consensus disorder prediction 163 183 - -
Stsc30300g00007 922 Pfam PAZ domain 296 425 IPR003100 GO:0005515
Stsc30300g00007 922 SMART Piwi_a_2 579 886 IPR003165 GO:0003676
Stsc30300g00007 922 Gene3D - 474 640 - -
Stsc30300g00007 922 ProSiteProfiles Piwi domain profile. 579 886 IPR003165 GO:0003676
Stsc30300g00007 922 FunFam Protein argonaute 7 287 414 - -
Stsc30300g00007 922 ProSiteProfiles PAZ domain profile. 317 410 IPR003100 GO:0005515
Stsc30300g00007 922 SMART PAZ_2_a_3 293 432 IPR003100 GO:0005515
Stsc30300g00007 922 CDD PAZ_argonaute_like 292 406 - -
Stsc30300g00007 922 MobiDBLite consensus disorder prediction 18 41 - -
Stsc30300g00007 922 Pfam Argonaute linker 2 domain 436 481 IPR032472 -
Stsc30300g00007 922 SUPERFAMILY Ribonuclease H-like 564 886 IPR012337 -
Stsc30300g00007 922 CDD Piwi_ago-like 454 880 IPR045246 -
Stsc30300g00007 922 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 888 - -
Stsc30300g00007 922 SMART DUF1785_2 240 292 IPR014811 -
Stsc30300g00007 922 FunFam Protein argonaute 3 647 922 - -
Stsc30300g00007 922 Gene3D paz domain 286 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00007 Stsc-Chr30300 29010 36157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30300g00007 62 922 Eukaryotic Initiation Factors Gene Family AT5G43810 36.444 2.74e-161 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00007 K11593 - gmx:100778875 1355.89