Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30300g00002 ATGACTGCTGAAGAAGTTGATAGTGGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAGGAAGCCTTGGTGACTTATCCGGACGATGCTCCGGATCGATGGGAGAAAATCGCGGCCGATGTACCGGGGAAAACGGTAGAAGAAATTAAGCAGCATTATGAGCTCTTGGTTGAAGATGTTAATCTGATTGAATCTGGACGTGTGACTCTACCGTCGTATAATTCCTCTTCAGAAGGCTCAGCAACTCATGCAAGTGATGAAGGAGGAGGTGGCAAGAAGGGGCAGCATAATACCGAGTTTAACCATGGAAATAAAGGCTCGAGATCGGATCAGGAGCGGCGAAAGGGTATTGCTTGGACAGAAGATGAACACAGGTTGTTTCTTCTTGGCTTGGATAAGTACGGAAAAGGCGACTGGCGAAGCATATCGAGGAACTTCGTGGTGACAAGAACGCCGACACAAGTAGCAAGCCATGCTCAAAAGTACTTCATTCGATTGAACTCGATGAACAAAGATAGAAGGCGATCAAGCATACATGATATCACCAGTGTCAACAATGGTGAAGTTTCAGCACCTCAAGGACCAATTACAGGTCAAACAAACGGTCTTGCAGCCAATTCCGCCGTCAAATCACCGAAACAAGCACCTCCTCCGCCTCCTCCGGCTTCAGCCGGTGTACCGGGAGTAGGACTATACTCTGCTCCTACCATTGGACAACCTATAGGAGGACCCTTAGTATCCGCCGTTGGCACCCCGGTGAATCTTCCTCCCCCTGCACACATTGCATATGGTATTCGAGCACCGGTTCCCGGCACAGTTGTTCCCGGTGCACCGGTGAACATGGTTCCCATGGCATATCAGATGCCAGGCACATCTGCTTCTCACAGGTGA 894 0.4978 MTAEEVDSGSEWSWEQDKAFEEALVTYPDDAPDRWEKIAADVPGKTVEEIKQHYELLVEDVNLIESGRVTLPSYNSSSEGSATHASDEGGGGKKGQHNTEFNHGNKGSRSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEVSAPQGPITGQTNGLAANSAVKSPKQAPPPPPPASAGVPGVGLYSAPTIGQPIGGPLVSAVGTPVNLPPPAHIAYGIRAPVPGTVVPGAPVNMVPMAYQMPGTSASHR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30300g00002 297 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
Stsc30300g00002 297 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Stsc30300g00002 297 Gene3D - 4 71 - -
Stsc30300g00002 297 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Stsc30300g00002 297 CDD SANT 11 58 IPR001005 -
Stsc30300g00002 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 168 IPR017930 -
Stsc30300g00002 297 PANTHER TRANSCRIPTION FACTOR KUA1 8 287 - -
Stsc30300g00002 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 116 166 IPR006447 GO:0003677
Stsc30300g00002 297 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Stsc30300g00002 297 MobiDBLite consensus disorder prediction 73 116 - -
Stsc30300g00002 297 Gene3D - 118 170 - -
Stsc30300g00002 297 CDD SANT 119 164 IPR001005 -
Stsc30300g00002 297 FunFam Transcription factor SRM1 4 71 - -
Stsc30300g00002 297 MobiDBLite consensus disorder prediction 186 228 - -
Stsc30300g00002 297 FunFam transcription factor MYB1R1 118 169 - -
Stsc30300g00002 297 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Stsc30300g00002 297 Pfam Myb-like DNA-binding domain 11 54 IPR001005 -
Stsc30300g00002 297 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Stsc30300g00002 297 SMART sant 116 166 IPR001005 -
Stsc30300g00002 297 SMART sant 8 60 IPR001005 -
Stsc30300g00002 297 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Stsc30300g00002 297 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30300g00002 Stsc-Chr30300 5687 10074 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30300g00002 Myb_DNA-binding 7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30300g00002 - - ccaj:109792793 479.944