Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30298g00028 ATGGATCCCAATCACGTTAGTATCAACGATTACATAAACGCCTACGGTTTCGGCGACGATGGTGGTGATCCTCAGCTTTCAGATTTCACCGATTGGGATCTACAGGGACAATACACGTTACCCTTCGACTTTACCCCAAGCAACGATTTTGATCCATTTTACGCCGACCCATTTGCTTTTCATGCAAATTCGTTTCCCAATTCCGGAATCTCAGACCAGTTTCTTCCATCCTCTAGCACAAGCCACGTGGAAGACTCCATGGCGGGTTCATCGTTTGGGGCTGTGGCTTCTATGGCGGATCCTTCCATGGAAGACGCTGAGTTTTCTGAAACAGTGAGGTACATAAGCCAGATGTTGATGGAAGAGAATTTTGAGGATAAGCCATGCATGTGCTATAATCCTATTAGCTTGCAAGACACTGAGAAATCCTTCCATGAAGCCATCAACAATGAAGGATTGCCCCTTTCCCCTAATGAGCACCCTCTTGAGAGCCCTGATGGGATTAGTGGTGGAAGCTTCACCACTGGTTGTTCTTCTGGAGATTGCAGCAATTGCAGTAGTGAGAACCATCCATGTTCTCATGAATTCAATACCCTTTCTCCAGATACTGCTGTTTCATCAGGTGATAGTGCTTTGCAGTGTGATTCACATTCACATTCGCATTGGTTTTCGAATGTGCCTTCTCATCAGCTTTCGCTTCCTCAACATGCTTTGACTAGTATTGGTGATGGTGTGTTTGATTTGGATCCTTCTTCCACCAAGCTCTTGGCTCAGAATATCTTCAGTGATGCTGACTCTATGTTGCAGTTCAAAAGAGGGTTGGAGGAAGCTAGCAAGTTTCTTCCCCCTGGGCCAAGGCTTTTCACTGGCCTGGAGGGAGGAAGCAGCAGCAGCACCATGCATGCAGAAGAGCCAAAGAGAGAGGTGGAGAAGGCGGCCGCGGCGGTGCCAGTGAAGGTGGAGAATGATGTTAAGGGGAAATCAAAAGGAGTTTTTGCTGAGCCTTACCCTTACAACATGGTTCCAGCAACAACAAAAGCTGCAAAAAATACACCAGTGAGGAGTCTGGATGGAGTGAAGAGTAGGAAGCATCATGATCGCCAAGGTGATGATGGTGAAGAAGGAAGATGCAACAAGCAATCTGCAATTAATGTTGAGGAGGAAAGTGAAATATCTGATATGTTTGACAAGGTGCTGCTTAGTATTGAAAATGTCCCACTCTCTGCTGAACAGCAAGATGGACTAGTTGTGGATACTCCACAACTAATTGAAGAACCACATTCATCCGAGGGAGGGAGTAGGAGATCCAAGAAAAAAGGCAAGAAGAAAGAAACTGTGGATTTGAGAACTCTTTTGATTCTGTGTGCTCAAGCTGTGTCTGCCAATGACCAAAGGACTGCTAGGGAACTACTAAAGCAGATCAGACAGCATTCCGTGCCCCTCGGCGATGCATATCAGAGGCTGGCGCATTACTTCGCCGACGCCCTTGAGGCGCGCATGGCTGGCACTGGCCCTGGAACTCATATATTCTATGCCTTTCTTAGCTACAAGAAGTTCAGTGCTGCTGATTTTCTCAAGGCCTACCAAGTTTTTATATCTGCTTGCCCTTTCAAGAAATTTGCACATTTCTTTTCAAATAGAATGATTTTGAACACAGCTGAAAAGGCAGAAACTCTTCATATTATTGATTTTGGTATCCTCTATGGTTTCCAGTGGCCAATACTTATCAAATTTCTAGCGAAACGAGAAGGTGGGCCTCCGAAGCTGCGGATCACAGGAATAGAGTATCCCCAGGCTGGATTCCGTCCCACGGAAAGAATTGAGGAGACTGGAAGGCGTCTAGCTAAATATTGTGAGCAATTCAAAGTTCCCTTTGAGTACAAAGCCATAGCATCAAGACACTGGGAAACCATTAAGGTTGAAGACCTTAACATCGAGGCCAATGAGGTAGTTGCTGTTAACTGTCTAGTAAGGTTCAAGAATTTACTCGAGGAGACGGTCGAAGTGAACAGTCCTAGAAATGCAGTTTTGAACTTAATCAAGAGGATAAATCCAGCTATGTTTACTCAGGCAGTTGTAAATGGTTCTTATAATGCTCCTTTCTTCCTCACACGCTTTAGGGAGGCACTGTTCCATTATTCTGCAATGTATGATATGTTTGATACTCTCATACCCCGAAACAACGGATGTAGGGCGATGCTTGAGAGAGAGGTTTTAGGTCGGGAGATTATGAATGTTGTAGCATGTGAAGGTCTAGAAAGGGTTGAGAGGCCTGAAACTTACAAGCAGTGGCAGGCTAGGATTACAAGGGCTGGTTTTCAGCAGCTACCGCCCGATAAGGAGTTAATGACCAAATTTAGGACCAAGTTACAGGAATGGTACCAGCACCACAGAGATTTTGTTTTTGATGAAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCAGGATTTTGTATGCCTCCTCTTGTTGGGTGCCAGTGCAATGA 2487 0.4532 MDPNHVSINDYINAYGFGDDGGDPQLSDFTDWDLQGQYTLPFDFTPSNDFDPFYADPFAFHANSFPNSGISDQFLPSSSTSHVEDSMAGSSFGAVASMADPSMEDAEFSETVRYISQMLMEENFEDKPCMCYNPISLQDTEKSFHEAINNEGLPLSPNEHPLESPDGISGGSFTTGCSSGDCSNCSSENHPCSHEFNTLSPDTAVSSGDSALQCDSHSHSHWFSNVPSHQLSLPQHALTSIGDGVFDLDPSSTKLLAQNIFSDADSMLQFKRGLEEASKFLPPGPRLFTGLEGGSSSSTMHAEEPKREVEKAAAAVPVKVENDVKGKSKGVFAEPYPYNMVPATTKAAKNTPVRSLDGVKSRKHHDRQGDDGEEGRCNKQSAINVEEESEISDMFDKVLLSIENVPLSAEQQDGLVVDTPQLIEEPHSSEGGSRRSKKKGKKKETVDLRTLLILCAQAVSANDQRTARELLKQIRQHSVPLGDAYQRLAHYFADALEARMAGTGPGTHIFYAFLSYKKFSAADFLKAYQVFISACPFKKFAHFFSNRMILNTAEKAETLHIIDFGILYGFQWPILIKFLAKREGGPPKLRITGIEYPQAGFRPTERIEETGRRLAKYCEQFKVPFEYKAIASRHWETIKVEDLNIEANEVVAVNCLVRFKNLLEETVEVNSPRNAVLNLIKRINPAMFTQAVVNGSYNAPFFLTRFREALFHYSAMYDMFDTLIPRNNGCRAMLEREVLGREIMNVVACEGLERVERPETYKQWQARITRAGFQQLPPDKELMTKFRTKLQEWYQHHRDFVFDEDNNWMLQGWKGRILYASSCWVPVQ 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30298g00028 828 ProSiteProfiles GRAS family profile. 439 825 IPR005202 -
Stsc30298g00028 828 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 380 820 IPR005202 -
Stsc30298g00028 828 Pfam GRAS domain family 448 824 IPR005202 -
Stsc30298g00028 828 MobiDBLite consensus disorder prediction 356 383 - -
Stsc30298g00028 828 MobiDBLite consensus disorder prediction 345 388 - -
Stsc30298g00028 828 MobiDBLite consensus disorder prediction 423 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30298g00028 Stsc-Chr30298 117446 120570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30298g00028 111 826 GRAS Transcription Factor Family AT1G07530 47.107 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30298g00028 GRAS 1.6e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30298g00028 - - adu:107461599 1282.7