Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30298g00027 ATGGCTGATCCAAGCCATGGTGGAAATCCAGCTACTGATTTCACATCTTGTAGTGAGGAAAACCAGCCTCCCTTGGATGAGAGTGATTTCTCTGCTGCAGCCCTGAACTACATAGATAATATGCTGATGAGAGAAAACATTGAGGAAGATTCCAACATCTTCCAAGATTCCTCAGCTCTCCAAGCAGCTGAGAAATCATTATATGATGCCATTGGCGAGAGGTACCCTTCTTCTGCCTCTACTTTGTCTTCTTCAACTTCCTCTATCCAGCAACATCTTCTTCAAAACTACCCCAGTGTGAAGAGCCCTGGAGATAGTAGTAGCACAGCTAGTTCTGGAAGCACTTTTGCCACCACCAATGCTAGTAGCAGCTCTGCTGACTCCTTCTGGAGTGGTTTTGATCTTTCTGTGATTCCATTGATGCCAAGCACTTTACCTTTTCCTGATAACTTTAATTTTCAGTCCAATCCATCCTCCATCACCCCCCAATCTTACCACAGTGGAAGCGACTTCACTGCCACTAACACTAGTACTGGATTAGGACAGGTGGTGATTAAGACTGAAGAACTCGATTATGATTTGGACGAGGAGGAAGAGGAAGAGGAAGAGATCCAATTTCTTGCTGATACCACAGGAAGCAGTAGCAGGCAATCAGCATTGTACATGGATGACACTGAGCTATCCGAATTTTTTGATAAGGTACTCCTTGGAACAGGATTGGGAAGAGGATCATCAAAAGATGAGGAAGAAGTTCCAAAAGACTCTCGCGGTAAGAAGAGCCGTGCAAGGAAAAGAAAGGACAACAATGATGAGGAAGTTATTGATCTGAGGTTACTATTGATGCAATGTGCACAAGCAGTTTCTTCTGATAACCATGCAATGGCAAAGGAGTTATTGATGCAGATCAAGATGCATTCTTCTCCAACAGGTGATGCAACTCAGAGAATGTGTCATTGCTTTGCAAATGCCCTTGAAGCACGCATGGCAGGGACAGGTACACACATTCATAGTGCCTTATCCACAAATAGGCCCTCTGCTTCTGATATGGTTAAGGCCTACCAAATGTATGCATCAGCTTGTCCATTTGACCAGACTGGAATCAGATTCTCAATCAACTCAATTTACAATTTGGCCATGGAAGGTGTGCAACTGCAAACTATTCACATTATTGAATTTGGCATCCGCTATGGCTTCAAGTGGCCTGGATTTATATCTCGCTTATCCAGTTGCCTATCTAATCGCCCCGGTGGGCCTCCGAAGCTTCGCATCACTGGGATAGAGTATCCACTACCTGGTTTGAAGCTTGAGGAAACAGGGCAATGCTTAGTAAGGTATTGTGAGAGATTCAAAGTCCCTTTTGAGTTCAATGCTATTGTTGCAAAGAAATGGGAGAGAATCAAGGTTGAGGATCTCAAGTTAAGGGAGAATGAGTTTGTAGCTGTGAATTGCATGTATAGGTTTGAGAATCTGCTTGATGAGACAGTTATGTTGGAGAATCCTAGAGATTCTGTTTTGGAGTTAATAAGGAAGGCTAATCCAAACATATTTGTGCATGGCATTGTGAGTGGTTGA 1572 0.4345 MADPSHGGNPATDFTSCSEENQPPLDESDFSAAALNYIDNMLMRENIEEDSNIFQDSSALQAAEKSLYDAIGERYPSSASTLSSSTSSIQQHLLQNYPSVKSPGDSSSTASSGSTFATTNASSSSADSFWSGFDLSVIPLMPSTLPFPDNFNFQSNPSSITPQSYHSGSDFTATNTSTGLGQVVIKTEELDYDLDEEEEEEEEIQFLADTTGSSSRQSALYMDDTELSEFFDKVLLGTGLGRGSSKDEEEVPKDSRGKKSRARKRKDNNDEEVIDLRLLLMQCAQAVSSDNHAMAKELLMQIKMHSSPTGDATQRMCHCFANALEARMAGTGTHIHSALSTNRPSASDMVKAYQMYASACPFDQTGIRFSINSIYNLAMEGVQLQTIHIIEFGIRYGFKWPGFISRLSSCLSNRPGGPPKLRITGIEYPLPGLKLEETGQCLVRYCERFKVPFEFNAIVAKKWERIKVEDLKLRENEFVAVNCMYRFENLLDETVMLENPRDSVLELIRKANPNIFVHGIVSG 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30298g00027 523 MobiDBLite consensus disorder prediction 9 25 - -
Stsc30298g00027 523 MobiDBLite consensus disorder prediction 241 268 - -
Stsc30298g00027 523 MobiDBLite consensus disorder prediction 97 127 - -
Stsc30298g00027 523 ProSiteProfiles GRAS family profile. 267 523 IPR005202 -
Stsc30298g00027 523 Pfam GRAS domain family 277 518 IPR005202 -
Stsc30298g00027 523 MobiDBLite consensus disorder prediction 243 257 - -
Stsc30298g00027 523 MobiDBLite consensus disorder prediction 1 30 - -
Stsc30298g00027 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 197 518 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30298g00027 Stsc-Chr30298 110438 112636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30298g00027 23 523 GRAS Transcription Factor Family AT2G29060 40.977 1.24e-110 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30298g00027 GRAS 1.1e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30298g00027 - - aip:107614541 766.918