Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30298g00017 ATGGGAGTTTGTCTGAGTGCCCAAGTTAAAGCTGAGAGCCCCTACAATACTGGGGTAAACTCAAAGTATGTGAGCACAGATGGGAATGATCACAGTAGTACAAACAGTAAGGCTTCGTCTACCTCGATGCCACCGACTCCACGGAGTGAGGGCGAGATCTTGCAGTGTTCTATTCTAAAGAGCTTTAGTTTATCAGAACTTAAGACAGCCACAAGAAATTTCCGTCCAGACAGTGTGTTAGGAGNNNNNNNNNNTTGGATTGATGAGAATTCATTGGTTGCTGCCAAACCTGGCACTGGCATTGTTATTGCTGTGAAGAGACTTAATCAAGATGGCTTACAGGGTCACAGGGAGTGGTTGGCTGAAGTAAACTATCTTGGACAATTTTCTCATCCTCATCTAGTGAGATTGATTGGATATTGCCTTGAAGACGAACATCGCCTTCTGGTCTACGAGTTTATGCCTCGTGGCAGCTTGGAGAATCATCTGTTCAGGAGAGGCTCATACTTTCAACCTCTATCATGGAGTCTCCGTTTAAAGGTTGCTCTTGATGCAGCTAAAGGGCTTGCATTCCTTCACAATGCCGAGACACAAGTCATTTTCCGTGATTTTAAGACTTCCAATATCTTGCTTGACTCAAAGTACAATGCAAAACTTTCGGATTTCGGGCTAGCGAAGGATGGACCAACAGGTGACAAAAGTCATGTGTCAACCAGAGTGATGGGAACCTATGGATATGCAGCTCCTGAATATCTAGCTACCGGCCATCTTACTGCAAAGAGTGATGTCTATAGTTTCGGTGTAGTCCTACTTGAAATGCTATCCGGCAAGAGGTCGGTCGACAAGAATAGGCCGACTGGACAACACAGTCTGGTGGAGTGGGCTAAACCATACCTGGCTAACAAGCGAAAGGTCTTTCGAGTTTTGGACACGCGTCTTGAAGGGCAGTATTCAATTGATGATGCCTATAAGGTAGCCACACTCACCTTGAGATGCATATCTAGAGAATCCAAGTTCAGGCCAAACATGGATGAAGTTGTTACACTATTAGAGCAGCTGCAGGCTCCTAATAAGGCAACTGCAGACAACCGAAATCCTTCTTGTAATGCGTCTCGCCCTCGGAGAAGAAGTGCCGATGATGTTAGCCGTAGGAGGGCCACCCCTACAGCTTACCCTAGGCCCTCTTCTTCAACTCTGTATACTTGA 1206 0.4561 MGVCLSAQVKAESPYNTGVNSKYVSTDGNDHSSTNSKASSTSMPPTPRSEGEILQCSILKSFSLSELKTATRNFRPDSVLGXXXXWIDENSLVAAKPGTGIVIAVKRLNQDGLQGHREWLAEVNYLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHNAETQVIFRDFKTSNILLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRSVDKNRPTGQHSLVEWAKPYLANKRKVFRVLDTRLEGQYSIDDAYKVATLTLRCISRESKFRPNMDEVVTLLEQLQAPNKATADNRNPSCNASRPRRRSADDVSRRRATPTAYPRPSSSTLYT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30298g00017 401 Pfam Protein tyrosine and serine/threonine kinase 98 349 IPR001245 GO:0004672|GO:0006468
Stsc30298g00017 401 Gene3D Transferase(Phosphotransferase) domain 1 154 376 - -
Stsc30298g00017 401 MobiDBLite consensus disorder prediction 357 401 - -
Stsc30298g00017 401 SUPERFAMILY Protein kinase-like (PK-like) 50 350 IPR011009 -
Stsc30298g00017 401 Gene3D Phosphorylase Kinase; domain 1 50 153 - -
Stsc30298g00017 401 MobiDBLite consensus disorder prediction 357 372 - -
Stsc30298g00017 401 FunFam Probable serine/threonine-protein kinase PBL8 154 370 - -
Stsc30298g00017 401 MobiDBLite consensus disorder prediction 16 50 - -
Stsc30298g00017 401 MobiDBLite consensus disorder prediction 16 48 - -
Stsc30298g00017 401 PANTHER OS01G0588500 PROTEIN-RELATED 36 354 - -
Stsc30298g00017 401 ProSiteProfiles Protein kinase domain profile. 74 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30298g00017 401 FunFam Serine/threonine-protein kinase BIK1 40 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30298g00017 Stsc-Chr30298 72506 75100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30298g00017 60 350 Glycoside Hydrolase AT3G07070 49.164 9.42e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc30298g00017 PK_Tyr_Ser-Thr 8.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30298g00017 - - gmx:100798404 664.84