Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30298g00010 ATGGTTTTCCCTTCTATCCCACTCTATTTAGATCCTCCCACCAATTGGCACCAGCAGCAGCAACCAAGTCATCAACAGCATCATCATCACCACCAGGCAAATGGCAATGAAAGTTCGTCTGAGCTGCTTCCTCAGTTGCCGGCGCTGCAAGCACAGGGCCCTCAGATGGGCTCAGTTAGGCCCGGGCCGATGGGGGATCGGGGGCAAATAGCGAAGATATCATCAGGAGGAGATCAGGGAACACTCAAGTGTCCTCGGTGCGAATCAAGCAACACAAAGTTCTGCTACTTCAACAACTACAGCCTGTCTCAGCCGCGACACTTCTGCAAGACCTGTAGGCGTTACTGGACGAGAGGCGGTGCCCTTAGGAACGTTCCGGTCGGTGGCGGTTGCCGCAGAAACAAGAAGACCAAGAGGAGTAGTAGCCACTCCAAGTCACCAGCAGCAGCAGCAGCAGCAAACACTGAAAAGCAGTCATCATCATCAGTTCCTTTATCAGGTTTTAACAACCGAGGTTTCATGGCTTCTCTTGAGAACATGAGCCTGTACGGAGGAGGAGGAGTAGAACAGTGGCGGTTACATCAGAATCAGCATCAGCAGCAATTTCCTAATTTGTTGAGTGGTTTTGATCCAATAACTACCACTTGTTCTTCTTCTTATTCGTTCCCTTTCGTGCAGAGTAGTAATGTTATTGAAGGTGGTTTGCTCGGAGGAGTATTCGGAGAATCTAGGGTTAAAATGGAAGCTGGGAATGGAGGCCTATTAAGCAGTTTGTCATCAAGAATATCCCCTCTGAGTTTTACAGAGAATTATTCATGGACTGATCTTGCCGCTTCATCTTCTTCCGCTGCTCCTCATCTCTTGTGA 867 0.4902 MVFPSIPLYLDPPTNWHQQQQPSHQQHHHHHQANGNESSSELLPQLPALQAQGPQMGSVRPGPMGDRGQIAKISSGGDQGTLKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTKRSSSHSKSPAAAAAANTEKQSSSSVPLSGFNNRGFMASLENMSLYGGGGVEQWRLHQNQHQQQFPNLLSGFDPITTTCSSSYSFPFVQSSNVIEGGLLGGVFGESRVKMEAGNGGLLSSLSSRISPLSFTENYSWTDLAASSSSAAPHLL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30298g00010 288 MobiDBLite consensus disorder prediction 12 40 - -
Stsc30298g00010 288 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Stsc30298g00010 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 194 IPR045174 GO:0003700|GO:0006355
Stsc30298g00010 288 MobiDBLite consensus disorder prediction 126 163 - -
Stsc30298g00010 288 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
Stsc30298g00010 288 MobiDBLite consensus disorder prediction 143 163 - -
Stsc30298g00010 288 MobiDBLite consensus disorder prediction 52 82 - -
Stsc30298g00010 288 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30298g00010 Stsc-Chr30298 32194 33437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30298g00010 1 138 C2C2-Dof Transcription Factor Family AT2G37590 53.691 2.33e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30298g00010 zf-Dof 4.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30298g00010 - - adu:107461669 225.328