Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30298g00008 ATGGAGAGTGGTCCAGGGTCTTCATCGTCATCTTCGCGATGGAACCCAACAAAGGAGCAGATAAGCATGTTAGAGGAAATATATAACCAGGGAGTGAGAACTCCAAACCCTAAAGAAATTAAGGAGATCATGGAGAGGCTCAAGGTTTATGGTCCAATTGAAGGCAAGAACATCTTCTACTGGTTCCAGAATCACAAAGCTAGGCAGCGTCAGAAACATAAGGATCAACAACAACAACAACGACTTCAACTTAACCACCATCCTTATGTCAATCACTTTGTTCACCCCATCTCTCCCCCACTTTCTCCAAATGTGGTGCGTAGTCCAGCATATGGGTTGCTACAGAGTGAAATTGGGTATTATCCAAATCAACAACAAAATATGGTTATAAGCCCAAGGACCAATCAAGCAGTACCTATGATGATGATGCCACCGCAGTCCATTAGTCCAAGGACGGAGAATGTTGTGCCAATGGTGATCCCACGTGGGCCCTTGAACCCAAGGAATGTGATGTATCCCCAGCCCATGTATGAGCAACAAAGAATCCCCTCGTCTGAGAACGGCCCAAGGACGTTGGATCTGTTTCCACAGCGCCCATCTGGGACATTAGCAGCAGGCAACAGGACAAGACAACAACAATCTCATGAACCTTCTAATCCCCACTTCATTGATTTTTTCACTGGCCGAGGCCCTCCTTGA 699 0.4635 MESGPGSSSSSSRWNPTKEQISMLEEIYNQGVRTPNPKEIKEIMERLKVYGPIEGKNIFYWFQNHKARQRQKHKDQQQQQRLQLNHHPYVNHFVHPISPPLSPNVVRSPAYGLLQSEIGYYPNQQQNMVISPRTNQAVPMMMMPPQSISPRTENVVPMVIPRGPLNPRNVMYPQPMYEQQRIPSSENGPRTLDLFPQRPSGTLAAGNRTRQQQSHEPSNPHFIDFFTGRGPP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30298g00008 232 Gene3D - 2 87 - -
Stsc30298g00008 232 ProSiteProfiles 'Homeobox' domain profile. 7 72 IPR001356 GO:0003677
Stsc30298g00008 232 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 213 IPR044555 GO:0003700|GO:0099402
Stsc30298g00008 232 CDD homeodomain 13 68 IPR001356 GO:0003677
Stsc30298g00008 232 SMART HOX_1 9 76 IPR001356 GO:0003677
Stsc30298g00008 232 SUPERFAMILY Homeodomain-like 5 78 IPR009057 -
Stsc30298g00008 232 Pfam Homeodomain 11 71 IPR001356 GO:0003677
Stsc30298g00008 232 MobiDBLite consensus disorder prediction 181 232 - -
Stsc30298g00008 232 MobiDBLite consensus disorder prediction 202 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30298g00008 Stsc-Chr30298 20179 21068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30298g00008 8 228 Wox Gene Family AT5G59340 34.137 1.35e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30298g00008 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30298g00008 - - aip:107612346 280.411