Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30297g00017 ATGGGTGAGATCATACACCGCACATGCAGCCACACTAACGTGACGGACCAAAATTTGTTATTAAAATATCAAGAGAATTACCGAAATTTGGTAAATGAGATGAGAAATGAGATGGCTCAATCTGGGTTTTCTTTTAGGGAATTGGGGGACCCACCATATCGCATGCACATGTTCTCGCAATGTAGGTTTGATCTTTCAGCTTCTGAATGCACACATTGCTTTAACACCATTCAAGGCATTTTTTCCAATTGCATGCCTGCCAAGGGTGGCCGTGCCTTTTCAGGTGATGGATGCTTTCTGCGCTACGATAATTATAGTTTTTTTCAGGAGAGCGTTACCCCTTATTATTTGAGGGGATGCAGTGATGATCAAGCAAAAGATGGAAAAAATTTTGCTAGTTTGGTAGTAAATATGATAAATAAAATGGCAATGGAGGCACCTAAAAGTGGAAGCTACGCAGCTGTAGAAGGACGCCATGGTTTCAATTTAGTAAGCTATGGTGTGGCTACTTGTTGGAAAACACTGAGCATGGATATGTGTGCTGCTTGTCTTTCAAATGCTGCTAGTACTGCCATATCATGTCTGCCATCAACCAAGGTTCATGTTGTTGATGCCGGATGCGTGTTGCGTTACGCTGATTATGACTTCATCAATTTTGACATTAAAAGCAAACAAGCTAGAGGACAAGAGATGAGCCCAGCTGGTAGAGTAAAATTAAGCTCATGGTTCATGCATTTTGAGTACTCAACGTTAGAAAGAGCGACCAATGTTTTCAACGAATTCCATAAACTTGGTGAAGGGGGTTATGGTGAAGTTTACAAGGGAACTTTACAAGATGGTAGAGAAATAGCGATAAAGCGTTTCTTTTTAAGTGGAAAGCAGGGGAAAGAGGAAGTTTACAATGAAATTGATGTATATAGTAAAGCTCAACACAAGAATCTTGAAGACCCGGAGAAGAAGAAAGAGTTAGATTGGCCAAAAAGGCATGGTATAATCCTTGGGATAGCTGATGGATTGGAACATCTTCATAACAATTTCGAAGGACCAATAATTCATAGAGACATCAAAGCCGGAAACATTCTATTAGACTTAAAATATAGACCAAAGATCTCCGATTTTGGCTTAGCAAAGTTGAAGTCCTATGAATCTGCATCTATTGTAGGCACATTGGGGTATATGGCACCAGAATATTTGGCTGGTTGTGCCATAACAGAAAAAGTAGACATTTACAGCTTTGGAATATTAGTGCTTGAAATCATAAGTGGAATGGAGAATGGAAAATTTGAGTCTATTGAAGAAACATTTGAGACTCTTGTTTCTCATGTATGGAAGCATTTCAAATCAAACACAACATCAAAAATTATTGATGAAAACATGAAAAATCAAGATGTTGAAGAAATTGAAAGAATTATTCAAGTGGGACTTTTGTGCACACAAGAGTTGCCATATCTACGTCCTTCCATGACAGAGGTTGTAGCAATGCTTAGACGAAAAGATCTTGTGATGCCATCACCTTCCAAACCTCCATTCATCGTTGATTCTTATGAATTGTCACAAGAAGTAGAATCTAGTTGGCAATCGAAATGCTCAGATGTGTCAGAATCATCTATGCCTTTAAACTTTGGAGAAAAAAGTGTGATAGGGCTTGTCGTTGAAAGCCTTTTCCCTCGCCCTCACCGTTCAGAAAAGGAGGAACAGACCACACAGGGTAGAGTGGAGAAGTTAATCCTCCGCGTATCCTTGGCATACACAATTGTGAGGGTACTAATCCCACGATGGATTCGAGTAAATCCGCGTTACTGGAATAAACTCACTAGCGGTGCACGCATGGCAGGAGTTTGCAGTAAACAACTTGAGGTTGAAAGAACTCAGTGGAACTTGCTGTCACCAGGTCCACAACTCATGCATCAAGGCACCATATTGAATCCGTGTCGCGGGGCCCTCATCCTTGTTGGCAAAGGCGTACGAATAGCGGTAACGAACTTAACTTCATTCTTCCCCATCCAACCTATGGGGGACAGACAGCTACGGTCATGTGCACGTTTCACCTTACAGCCGAGACACTATGGGAAACTACTCGCTTCTAACAGAAATAATTGCGGAAAATCAAACGGGCAGCATAACGACAGGAATTAA 2136 0.4096 MGEIIHRTCSHTNVTDQNLLLKYQENYRNLVNEMRNEMAQSGFSFRELGDPPYRMHMFSQCRFDLSASECTHCFNTIQGIFSNCMPAKGGRAFSGDGCFLRYDNYSFFQESVTPYYLRGCSDDQAKDGKNFASLVVNMINKMAMEAPKSGSYAAVEGRHGFNLVSYGVATCWKTLSMDMCAACLSNAASTAISCLPSTKVHVVDAGCVLRYADYDFINFDIKSKQARGQEMSPAGRVKLSSWFMHFEYSTLERATNVFNEFHKLGEGGYGEVYKGTLQDGREIAIKRFFLSGKQGKEEVYNEIDVYSKAQHKNLEDPEKKKELDWPKRHGIILGIADGLEHLHNNFEGPIIHRDIKAGNILLDLKYRPKISDFGLAKLKSYESASIVGTLGYMAPEYLAGCAITEKVDIYSFGILVLEIISGMENGKFESIEETFETLVSHVWKHFKSNTTSKIIDENMKNQDVEEIERIIQVGLLCTQELPYLRPSMTEVVAMLRRKDLVMPSPSKPPFIVDSYELSQEVESSWQSKCSDVSESSMPLNFGEKSVIGLVVESLFPRPHRSEKEEQTTQGRVEKLILRVSLAYTIVRVLIPRWIRVNPRYWNKLTSGARMAGVCSKQLEVERTQWNLLSPGPQLMHQGTILNPCRGALILVGKGVRIAVTNLTSFFPIQPMGDRQLRSCARFTLQPRHYGKLLASNRNNCGKSNGQHNDRN 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30297g00017 711 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 320 524 - -
Stsc30297g00017 711 SMART serkin_6 258 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30297g00017 711 ProSiteProfiles Protein kinase domain profile. 258 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30297g00017 711 ProSitePatterns Protein kinases ATP-binding region signature. 264 286 IPR017441 GO:0005524
Stsc30297g00017 711 Gene3D - 2 107 IPR038408 -
Stsc30297g00017 711 Gene3D - 113 216 IPR038408 -
Stsc30297g00017 711 ProSiteProfiles Gnk2-homologous domain profile. 113 216 IPR002902 -
Stsc30297g00017 711 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 306 503 - -
Stsc30297g00017 711 Gene3D Transferase(Phosphotransferase) domain 1 313 503 - -
Stsc30297g00017 711 SUPERFAMILY Protein kinase-like (PK-like) 237 496 IPR011009 -
Stsc30297g00017 711 Pfam Salt stress response/antifungal 18 105 IPR002902 -
Stsc30297g00017 711 Pfam Salt stress response/antifungal 120 214 IPR002902 -
Stsc30297g00017 711 Coils Coil 20 40 - -
Stsc30297g00017 711 Pfam Protein kinase domain 328 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30297g00017 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Stsc30297g00017 711 Gene3D Phosphorylase Kinase; domain 1 220 312 - -
Stsc30297g00017 711 ProSiteProfiles Gnk2-homologous domain profile. 2 107 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30297g00017 Stsc-Chr30297 102426 108439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30297g00017 23 511 Receptor kinase-like Gene Family AT1G70520 37.063 9.77e-117 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30297g00017 Pkinase 8.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30297g00017 - - aip:107614699 881.322