Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30297g00004 ATGTTTGATGTGAATAGGAATAAGTGTGCAGCATGCTTCAGGCAGTTCAACAGACTGGAGCACCTGGTGGAGCACATGAGAATCTCATACCATTCTGTTCATGAACCAACTTGTCCCATTTGCAGAAAACACTGTAGGTCTTTTGAGTCACTAAGGGAACACCTTATAGGTCCATTGCCGAAACAAGAATGCCGAGATATATTTGCATACCGAGGGTGCAAGTTTTGCTTGAAGGTGTTTGACAGCCCTAACTCACGCAGGATTCACCAAGAAAGATGCCAACTCTCTGGACTAACTTCTGGAATAATTGGTCGCTTTTCTAGCATGGGTCTTCGAGATAACTTGACAATTGGATCAAGAGGAGCACAAGTAGTTGCACTTGCTTGTAAAATGGTTGGTGGTGGCAGTGATGGTTCACTTGATCTTTGTGCAAGAGTATGCATCATCGATGACCATGAGAACATCATCTTCCATTCTTATGTCAAACCGCCATTTCCAGTCACAAATTATAGGTACGAGACAACAGGAATTAGAGCAGAATACTTGAGGGATGCAATACCAATGAGACAAGTTCAGAGGAAGATTCAAGACTTCCTTTGCAATGGAGAACCCATGTGGACAATTAGAGCAAGAGGTGGCAAAGCCAGGATTCTTGTTGGTCACGGTTTGGATCATGACCTAGAATGTCTCCAAGTAGAGTACCGACCAGAAAAGATAAGGGACACTGCAAAATACCCTCCTCTCATGAAAACAAGCAAGTTGAGCAACTCACTTAAATACTTAACACAGACATATCTTGGGTATGACATTCAAACTGGGATACAAGATCCTTATGATGATTGTGTTGCAACAATGAGACTGTACAAGAGAATGAGGTCCCAAGCACATAGAGTAGAGGATTACCCTTTGGCATCTGACCCACAAAACAGAAACAATTTTGCTTCTTGGAGGCAAAGCGAGCTTGAAAGAATGAGTCCTGAACAGATGCTTGAAATTTCAAGGAAGGAGCAGGGTGTTACAGGAAACACCAACGATGACCACGACAACAACGATGACAGTAACAACAATAACAACTCCAGCGTTGCCATCCAAAGAGGAGGAAGCGGCCGTAGGCCACGATGCCGCGCACCGAGGTCGAAGAACAAGCGAAACCGGCACTGTCACTGTGGCGTCTTTGTGCTAAGAAAAACCGACATTATCACCAACGTCACTCTCGGAAAGCTTGCGGCTCCTCAACGCGTCGTTTCACTCTAA 1254 0.4458 MFDVNRNKCAACFRQFNRLEHLVEHMRISYHSVHEPTCPICRKHCRSFESLREHLIGPLPKQECRDIFAYRGCKFCLKVFDSPNSRRIHQERCQLSGLTSGIIGRFSSMGLRDNLTIGSRGAQVVALACKMVGGGSDGSLDLCARVCIIDDHENIIFHSYVKPPFPVTNYRYETTGIRAEYLRDAIPMRQVQRKIQDFLCNGEPMWTIRARGGKARILVGHGLDHDLECLQVEYRPEKIRDTAKYPPLMKTSKLSNSLKYLTQTYLGYDIQTGIQDPYDDCVATMRLYKRMRSQAHRVEDYPLASDPQNRNNFASWRQSELERMSPEQMLEISRKEQGVTGNTNDDHDNNDDSNNNNNSSVAIQRGGSGRRPRCRAPRSKNKRNRHCHCGVFVLRKTDIITNVTLGKLAAPQRVVSL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30297g00004 417 ProSitePatterns Zinc finger C2H2 type domain signature. 9 31 IPR013087 -
Stsc30297g00004 417 Gene3D - 120 306 IPR036397 GO:0003676
Stsc30297g00004 417 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 317 IPR047021 GO:0004527
Stsc30297g00004 417 SUPERFAMILY Ribonuclease H-like 137 292 IPR012337 -
Stsc30297g00004 417 CDD REX4_like 125 289 IPR037431 GO:0006364|GO:0008408
Stsc30297g00004 417 FunFam RNA exonuclease 4 120 307 - -
Stsc30297g00004 417 Pfam Exonuclease 144 288 IPR013520 -
Stsc30297g00004 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 36 IPR013087 -
Stsc30297g00004 417 SMART exoiiiendus 123 297 IPR013520 -
Stsc30297g00004 417 MobiDBLite consensus disorder prediction 337 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30297g00004 Stsc-Chr30297 32925 36813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30297g00004 6 336 C2H2 Transcription Factor Family AT3G27970 73.952 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30297g00004 - - aprc:113862359 638.647