Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30297g00001 ATGCTCCTACTCCGATTCACCACCAATCCTCATCCTCCACCGCCATTTCTAGCCTGCACCACCAACACCGCATCTTCTTCTTCCTTTTTCCCCGCACCTCGCTCCAACAAGAACTGCTTTGTTCGCCCGAATGTGAGGACCCACACTCTTCGTGTTTTCGCAATGGCTGATAACAAGGCATTCAAGATGAACCTGAATGAGTACCTTGTCACTCTCGAAAGGCCCCTAGGCATCCGTTTTGCTCTCACCTCTGATGGCAAGATCATCGTCCATTCCCTCAGCAAAGGGGGCAATGCAGAGAGGTCGAGAATAATAATGGTAGGTGACACTTTGAAGAAAGCTGGGGATTCATCTCACAACACGCTCGTTGAGATTAAAGACGTTGGTGACACACAGAAGGTGCTAAAGGAGCAAACAAGTTCTTTTAGCTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCAATTCAACTACTGCATAAAATGAATGATCTTGAAATTTTGTTTAATAGAGGTCGAGTTCCTGTTACCACCTGGAACAAGACACTATTGGCATCTAATTTACAGCCATCTAATGAGAGCTCTGGGAATTCTGGATTTGTGGTGTTCAATTCCAAATATCTTACGACGAAAGGAAGCCAACTATTGGGCAATCAAAGTCAACATGCCATCACTTATGGTGATAGAAATTTCTTTACTCAACACACAACTCAACTTGCTTGTGTTTTTACTGAAGAAGCATGTGGAGATGGAGAATGGGCTCATGGAAGTTTCCCACTTGAGGAATATATTCAGGCGCTGGACCGTTCCAAGGATGAGATGTACTATAATCATTCCCTTGGCATGCGCTATAGTAAGATTACAGAGCAAATTTATGTGGGATCATGTATTCAAACAGAAGATGATGTGGAAACTTTGTCAACTGTTGAGGGAATTACTTCTGTTCTGAACTTCCAAAGTGGAACTGAAGCTGAAAATTGGGGTATAAATGTAAAATCAATCAATGATTCATGTCAAAGGAACAATATTCTCATGATCAACTATCCCATAAGGGATGGAGATTCATATGATATGAGAAAGAAACTTCCGTTTTGTGTGGGGCTGCTATTACGGCTGCTTAGGAAGAATCATCGTGTCTTTGTTACTTGCACTTCTGGATTCGATCGGTCTCCTGCTTGTGTGATTGCATACTTGCACTGGATGACAGATGTTTCCCTTCATGCAGCCTATACTTGGGTCACTGGGATGCACACATGCAGACCTGACAGGCCAGCAATTGCATGGGCAACGTGGGATCTTATAGCTATGGTTGAAAGGGGAAAACATGATGGACCTCCCACACATGCCGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTGGGAGACTTCACTGGAAACTGGAAAGAACCACTAAAGGCAGTGCACCAGGGTGGATCGAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAATACTACTACAAGTTCATTGTTAATGGACAATGGAAGCATTCAACTGCTTCACCAGCAGAAAGGGATGATAGGGGTAATGTTAACAATATAATTGCCATTGGCGAAACGGCCAGCATTCGGCCTTCAGTTCAGCACCAGCAGAAGGATGCAAATGTGGTGAAGGTAATTGAAAGACCTTTGAATGAAAAGGAGCGGTTTATGCTTGCAAAAGCAGCTCGTTGTATCGCATTCTCTGTCTGTCCTATCAGATTAGCTCCCAAGTAA 1749 0.4374 MLLLRFTTNPHPPPPFLACTTNTASSSSFFPAPRSNKNCFVRPNVRTHTLRVFAMADNKAFKMNLNEYLVTLERPLGIRFALTSDGKIIVHSLSKGGNAERSRIIMVGDTLKKAGDSSHNTLVEIKDVGDTQKVLKEQTSSFSLVLERPTSPFPIQLLHKMNDLEILFNRGRVPVTTWNKTLLASNLQPSNESSGNSGFVVFNSKYLTTKGSQLLGNQSQHAITYGDRNFFTQHTTQLACVFTEEACGDGEWAHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSTVEGITSVLNFQSGTEAENWGINVKSINDSCQRNNILMINYPIRDGDSYDMRKKLPFCVGLLLRLLRKNHRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVERGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAVHQGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIAIGETASIRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSVCPIRLAPK 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30297g00001 582 Gene3D Protein tyrosine phosphatase superfamily 275 540 IPR029021 -
Stsc30297g00001 582 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 272 415 IPR029021 -
Stsc30297g00001 582 Pfam Glycogen recognition site of AMP-activated protein kinase 449 530 IPR032640 -
Stsc30297g00001 582 ProSiteProfiles PDZ domain profile. 69 150 IPR001478 GO:0005515
Stsc30297g00001 582 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 436 532 - -
Stsc30297g00001 582 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 52 580 - -
Stsc30297g00001 582 SUPERFAMILY PDZ domain-like 74 165 IPR036034 GO:0005515
Stsc30297g00001 582 SUPERFAMILY E set domains 446 528 IPR014756 -
Stsc30297g00001 582 Pfam Dual specificity phosphatase, catalytic domain 304 412 IPR000340 GO:0008138|GO:0016311
Stsc30297g00001 582 FunFam Phosphoglucan phosphatase LSF1 chloroplastic 275 442 - -
Stsc30297g00001 582 ProSiteProfiles Dual specificity protein phosphatase domain profile. 282 444 IPR020422 GO:0006470|GO:0008138
Stsc30297g00001 582 CDD E_set_AMPKbeta_like_N 449 528 - -
Stsc30297g00001 582 Gene3D Immunoglobulins 436 532 IPR013783 -
Stsc30297g00001 582 CDD DSP_laforin-like 281 427 IPR045204 GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30297g00001 Stsc-Chr30297 5692 12856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30297g00001 134 582 Protein tyrosine phosphatase (PTP) family AT3G01510 69.488 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30297g00001 - - gmx:100814503 1033.09