Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00028 ATGGAAGACTACTCAGACGAAGATTATGAGTTCCTCAATCTTAGCCTTTCTGTTACTACTCCTTCTCCTACACAAACCAAAAACAACGATATCATGATGATGAGGATGAAGAAGAAGAAGACAAACAACAACTCTGTATCATCCTATGAAGGTAAGATCTTCATGCTCCTCCAAATGAGGGAAAACATGCTAAGACAAGACCACCATAACCACCACCATCACCATCACCAAAGAAGAAAACCACTACTTGTTGACCATAACAACACCACCAACAACAATGGCGGACTCCCTCTCATCCACTTGCTCCTCACAACCGCCACCGCCATTGACGACCACAACAGCAACAACATTGGTGCATCTCTGGAGAATCTGACAGATCTGTACCAAACAGTTTCCCTAACAGGCGACTCCGTTGAGCGTGTTGTGGCGTATTTCGCTGATGGCCTCGCCGCAAGGCTCCTCACAAAGAAATCGCCATTCTATGACATGCTCATGGAGGAACCAACCTGCGAAGAAGAGTTTCTTGCATTCACAGATCTCTACAGAGTCTCACCTTACTACCAGTTCGCTCATTTCACTGCAAACCAAGCAATCCTAGAAGCCTTTGAAGAAGAAGAAGAAAGGAACAACCGTTCCATCCACGTCATTGACTTTGACGTCTCCTACGGATTCCAGTGGCCATCTCTAATCCAATCACTCTCAGAGAAAGCTTCAAGCGGAAACCGCATATCTCTAAGGATTACCGGATTCGGAAGCACTTTGAAGGAGCTTCAAGAAACGGAGTCTAGATTGGTGAGCTTCTCGAAAGGATTTGGTAACCTTGTGTTTGAGTTTCAAGGGTTGTTGAGAGGGTCAAGGATCATGAATGTTCGGAAGAAGAAGAACGAGAGTGTTGCAGTGAACCTTGTTTCTTATCTAAACAGCGGGAGCAAGAGCAGTTTCTTGATGAATTTCTCAGAGACATTGGGATTAGTTCGTTCTCTGAGGCCTTCGGTTGTGGTGTTGGTGAAGCAAGAAGGTAGCAGGAGCGTTAGAACGTTCTTGTCTCGGTTCACAGAGTCATTGCATTACTTTGCGGCCATGTTTGATTCCCTTGATGATTGTCTTCCACTTGAGAGCGCAGAGAGGTTGAGGATCGAGAAGAAGCTTCTTGGGAAAGAGATAAAGAGCATGCTCAACTGTGACATGGAGGGTGTGGATTGTCCAAAGTATGAGAGGATGGAAGCGTGGAAAGGGAGAATGGAGAATCATGGTTTTGTTGGGATGAAGATGAGCTCCAAATCTGTGATGCAAGCGAAGCTGCTTCTGAAGATGAGGACTCATTACTATTATTGTCCACCACTTCAATTTGATGATGATAATAATGGTGGAAGTGGCGGTTTCAGGGTTTGTGAAAGGGACGACGGTACAGCCATATCTTTGGCGTGGCAGAATAGGTTTCTTCTCACTGTTTCCGCATGGCAATTACCACCTTCATCATCATCATAG 1488 0.453 MEDYSDEDYEFLNLSLSVTTPSPTQTKNNDIMMMRMKKKKTNNNSVSSYEGKIFMLLQMRENMLRQDHHNHHHHHHQRRKPLLVDHNNTTNNNGGLPLIHLLLTTATAIDDHNSNNIGASLENLTDLYQTVSLTGDSVERVVAYFADGLAARLLTKKSPFYDMLMEEPTCEEEFLAFTDLYRVSPYYQFAHFTANQAILEAFEEEEERNNRSIHVIDFDVSYGFQWPSLIQSLSEKASSGNRISLRITGFGSTLKELQETESRLVSFSKGFGNLVFEFQGLLRGSRIMNVRKKKNESVAVNLVSYLNSGSKSSFLMNFSETLGLVRSLRPSVVVLVKQEGSRSVRTFLSRFTESLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNCDMEGVDCPKYERMEAWKGRMENHGFVGMKMSSKSVMQAKLLLKMRTHYYYCPPLQFDDDNNGGSGGFRVCERDDGTAISLAWQNRFLLTVSAWQLPPSSSS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00028 495 ProSiteProfiles GRAS family profile. 89 488 IPR005202 -
Stsc30295g00028 495 Pfam GRAS domain family 98 488 IPR005202 -
Stsc30295g00028 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 76 482 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00028 Stsc-Chr30295 119912 121399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00028 113 487 GRAS Transcription Factor Family AT3G54220 34.367 2.27e-53 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc30295g00028 GRAS 5.3e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00028 - - gmx:100813979 625.55