Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00026 ATGGATAAAGAAGAAAGCCTTTGTACTAATACCTGGACACAGACGAATCGTGGAAATGGATTGCAGACAAACTTATCCTCTGATCCTTCAAGTTCAGATTATGGGGTGAGGGTAGAAACACCTTTCAAAGATTTTAACCAACCCTCTCAAATGCAGTCTCTACTTTCCAAGAATGTCACTAAGATTGCTGTTCAAGAAAACTGTGCACCAAGTGACTTATCTGGAACCAATATACTCCAAAATTGGGATGCCAGTTTGATGTTGAATAATCTTTCGTTCTTGGAGAAAAAGGTTCATCAACTGCAGGAGATAGTGTGCTTGATTGCTAGTCAAAAGGGCCAAACTTTTGGAGAGCGTAATGAACTCTTAACTCAGGAACAACAGCTCATCACTTCTGATCTTACATCAATTATTGTCCAGTTGATCTCTTCTGCAGGTAGTCTTCTTCCTTCTGCCAGGCATACCCTTACAAATACTAGTCCATTGATTCAACAGCTTTGCCAGCTTCAGGGGATTACGGTTCCTTCTGCATCCGGCTCAGGCCAAAGTAGTGTTCAACCACAAATTAATGGGGCAAATAAATTATCTGAGAGCTCAGTGCAGAATGATCAATCAAATAATTGTGAACTGGAGCAGAAGTACAAAGTGGAAGAACATGAATTGAAGGATGAGGAAGATGGTGATGATGGAGAAAACCTTCTGCCTGGTTCCTATGAGATTCTACAATTAGAAAAAGAAGAAATCCTTGCACCGCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTCCGAATGCACATGCGAGGCCATGGTGATGAGTACAAAACAGCAGCTGCTCTTGCAAAACCACATAAGGAATCCGAGTCGCAACCTGAGCTTATCAAGAGGTATTCATGCCCGTATGCTGGTTGCAAGCGTAATAAGGATCACAAAAAGTTTCAACCTCTGAAAACAATTTTGTGTGTCAAAAATCATTACAAAAGAACACACTGTGACAAGAATTACACTTGCAGCAGATGCCACATAAAGAAGTTTTCAGTCATGGCTGATCTTAAAACTCATGAAAAGCACTGTGGCAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAGGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCCATCCCCATGGAAGACAATAGAAGAACAACATGCCTTCCAGATCACGACAACCAAGATAATAGTAAAGCAAGAGGTATGAGCTTTAGTTTTGGATTAAATCCTTCAAGTGAAAACGGAGTTCAAAATGTCATGGATGTAAAAGGAAACATGGATGATCCTGTTACCTGTTTCTCACCATTGAACTTTGAAGCTAACTTCGGTGGCTATAATGAATTCACTCAACCACAATTTGATGACTCGGAAGGTTCTTTCTCTTTTCTGATTCCTGAATCTTTCAAATCTGGAGGAGTATCAAGCTCTGATAATGTTTTGTGA 1503 0.4032 MDKEESLCTNTWTQTNRGNGLQTNLSSDPSSSDYGVRVETPFKDFNQPSQMQSLLSKNVTKIAVQENCAPSDLSGTNILQNWDASLMLNNLSFLEKKVHQLQEIVCLIASQKGQTFGERNELLTQEQQLITSDLTSIIVQLISSAGSLLPSARHTLTNTSPLIQQLCQLQGITVPSASGSGQSSVQPQINGANKLSESSVQNDQSNNCELEQKYKVEEHELKDEEDGDDGENLLPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPHKESESQPELIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKNYTCSRCHIKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPMEDNRRTTCLPDHDNQDNSKARGMSFSFGLNPSSENGVQNVMDVKGNMDDPVTCFSPLNFEANFGGYNEFTQPQFDDSEGSFSFLIPESFKSGGVSSSDNVL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00026 500 SMART c2h2final6 303 336 IPR013087 -
Stsc30295g00026 500 SMART c2h2final6 341 363 IPR013087 -
Stsc30295g00026 500 SMART c2h2final6 254 276 IPR013087 -
Stsc30295g00026 500 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 66 475 IPR044300 GO:0010044|GO:0010447
Stsc30295g00026 500 MobiDBLite consensus disorder prediction 1 33 - -
Stsc30295g00026 500 MobiDBLite consensus disorder prediction 7 33 - -
Stsc30295g00026 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Stsc30295g00026 500 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Stsc30295g00026 500 Gene3D Classic Zinc Finger 238 317 - -
Stsc30295g00026 500 SUPERFAMILY beta-beta-alpha zinc fingers 252 280 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00026 Stsc-Chr30295 113952 116254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00026 221 484 C2H2 Transcription Factor Family AT1G34370 70.073 9.19e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30295g00026 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00026 - - gmx:100500526 689.493