Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00024 ATGGCCACCTATAACTGCATGTACACCTCCTCTTTCCTTTCTGTTTTTCTTCTCTATTCCTGCTTCTCTCCCATCATGGTCTTCTCTCAGCTATCTCAAAACCAAGCTACCACCATGGCCAGTCTCTCCAACCTACTTGCTCCTTCTGTTACATGGAACACTGCCAATCACTCAAATCCATGTTCATGGAATGGAGTCACTTGTGACTCTACCAAATCCCATGTCATCATGATTTCTCTGTCTGGAAACTCTCTCAATTCCAGTGACTTCCTTCCTGTTCTCTGCCAAATTGAAACTCTGCAGCATATTGATGTGTCCAACAACAGTCTCTCCTCAATCCCTCATGACTTCATTACTGAATGTGGAAAGATTAAGGACTTAAAGCTGCTGAATTTCAGTGGGAACAACTTATCAGGTTCTTTACCTACTTTCAATGGTTTTGCTGCACTTGAATACCTGGACATGTCTTTCAATGTATTGGAAAGTAGTATTGATATTCAGTTAGATGAAATGATTAGCCTCAAGACTTTGAACCTTACTGGCAACAAGTTCAATGGTCATCTTCCCACCAAATTGGGCAAGTCCATGGTTCTGGAGCAACTTTTGCTGGCTAAAAACCAGTTTCAAGGAGAAATCCCTGAAGAACAACTGTTTAGTTATGAAAACTTGACTTTGATTGATCTCAGCGAAAATCACCTTTCAGGTGCAATTCCTAGCCATATTGTACACCTATCTAAGTTGCAAACTTTGTTTCTTTCCTCTAATAACCTCAGTGGTCCAATTCCAATGTCAATCCTGAACATCACAACCCTTGTAAGATTTGCTGCAAACCAGAACAATTTCAATGGTTCTTTACCTTCTGCCATTTCAAATAATCTTATCAGTTTGGATCTTAGTTACAATGATTTGTCTGGTCCCATTCCAAAAAACATTTTATCATCACCAAGAATGGAGGTTGTGGATTTGTCCAATAATAGGTTAAGTGGAACATTATTACTTACAAGTATTTCTCCTAGCATAGTCAGGTTGAGATTGGGGAACAATTTGCTACAGGGGAACATTCCTTCAGATGCTTTTGCAAAAGCTCAGAATTTGACTTACTTGGAGCTGGAAAGTAATGAACTGACAGGAGGAATTCCAGCTATGTTGGGTTCTTGCCACAACCTGGCATTGCTGGATTTATCTCAGAATCATTTGAGTGGGATATTGCCGGCTGAGCTTGGAAATCTAAGCAATCTTCAAGTCTTAAATCTTCAAATGAACAAGCTTAATGGCACAATCACAACTCCATTTCAAAATGGTCAACTACAAAAGTTGTTAAAACTGAATTTGAGCATGAACTCTTTGACTGGATCAATTCCATCCCAGATATCAAGCTTGAGCAACCTTAGGTTCCTGCACTTGCAACAGAACAACATGAGCGGTTCCATACCTTCATCCATTGGCAATTCACCAGCCCTTCTGGATCTCCAACTAGGTGGAAACCAACTAAGTGGTGCTATCCCAAGTATGCCGTTGACTCTACAGGTTTCCTTGAATCTTAGTCACAACAACTTTAGTGGATCCATTCCTAGCAGTTTGAGTATTTTATATAACCTGGAAATATTGGATCTCTCATATAACAAATTTTCTGGTGGAGTTCCTGATGATCTAACCAAAATGGCTGCTTTGACACAGTTGCTACTTAATAACAATCAGCTTTCTGGTTTGCTTCCAAGATTTCGTGATTTTGTTCATGTTGAATACAATGGAACCAGTTTGGTACCAGCTCCTACGTCGGACAACACCACACCAAACTATTCCCAGGTATCTAGGAAGAAGGGATCATCTGTGGTTTTGGCAATCCTTGTTGCAATTGCAGCAGCCGTGTTTCTTGTTGGCCTTATCACTCTGCTGGTTGTACTTGTGTCAAGACGCTATTCCAAGGTTAACAATGAGCATGTACATTCAGGTGAAGATCATGGCCTTCCTCAGATTCTCCAAAGTCGTTTGTTAACTCCAAATGGTCTCCACAGATCAAACATTGACTTCTCCAAGGCCATGGAAGCTGTTGCTGAAACATCAAATGTTACTTTGAAGACCAAGTTTTCAACTTATTACAAGGCCATCATGCCATCTGGATCAATCTATTTTGTCAAGAAGATGAATTCAACTGAAAGGGCGTTGCCGGCAAGCAGTCATGCAAGATTCGGGAAAGAGATGGAGGCGTTGGCGAAATTGAACAATTCAAATGTCATGACTCCTTTAGCCTATGTTTTGTCCAGTGATGCAGCTTACACATTATATGAGTTTGTCTCAAATGGATCCCTCTTTGATGTTCTTCATCATGGAAGCATGGGAAACTCTTTGGATTGGGCTAGCAGATATAGCATAGCTGTTGGTGTGGCTCAAGGTCTCTCTTTTCTTCATGGCATCACCTCAAGTCCTATACTACTTCTTGACCTGTCAAGTAAAAGTATTATGCTCAAGTCCCTCAAGGAGCCTCTGGTTGGAGATATTGAGCACTACAAGGTCATTGATCCTTCCAGGAGTACAGGCAATTTTTCTGCTGTTGCTGGTTCTGTTGGCTATGTTCCTCCAGAATATGCATATACAATGAAAGTAACAGTGGCTGGGAATGTGTATAGCTTTGGGGTCATCCTGCTTGAACTGCTGACAGGAAAGCCTGCAGTGACAGAGGGAACAGAATTGGTGAAGTGGGTTTTGCGTAATTCCATGAACAAGGATTACATTATTGATTCCAATGTTAGCAAAACATCTCAAGCTGTGAGAAACCAGATGATATCAATTCTGCAGATTGCTCTTGTTTGTGTTAGTACATCCCCAGGATCAAGACCAAAGATGAAGAGTGTGCTAAGAATGCTCCTTAATGCTAGATAG 2880 0.4094 MATYNCMYTSSFLSVFLLYSCFSPIMVFSQLSQNQATTMASLSNLLAPSVTWNTANHSNPCSWNGVTCDSTKSHVIMISLSGNSLNSSDFLPVLCQIETLQHIDVSNNSLSSIPHDFITECGKIKDLKLLNFSGNNLSGSLPTFNGFAALEYLDMSFNVLESSIDIQLDEMISLKTLNLTGNKFNGHLPTKLGKSMVLEQLLLAKNQFQGEIPEEQLFSYENLTLIDLSENHLSGAIPSHIVHLSKLQTLFLSSNNLSGPIPMSILNITTLVRFAANQNNFNGSLPSAISNNLISLDLSYNDLSGPIPKNILSSPRMEVVDLSNNRLSGTLLLTSISPSIVRLRLGNNLLQGNIPSDAFAKAQNLTYLELESNELTGGIPAMLGSCHNLALLDLSQNHLSGILPAELGNLSNLQVLNLQMNKLNGTITTPFQNGQLQKLLKLNLSMNSLTGSIPSQISSLSNLRFLHLQQNNMSGSIPSSIGNSPALLDLQLGGNQLSGAIPSMPLTLQVSLNLSHNNFSGSIPSSLSILYNLEILDLSYNKFSGGVPDDLTKMAALTQLLLNNNQLSGLLPRFRDFVHVEYNGTSLVPAPTSDNTTPNYSQVSRKKGSSVVLAILVAIAAAVFLVGLITLLVVLVSRRYSKVNNEHVHSGEDHGLPQILQSRLLTPNGLHRSNIDFSKAMEAVAETSNVTLKTKFSTYYKAIMPSGSIYFVKKMNSTERALPASSHARFGKEMEALAKLNNSNVMTPLAYVLSSDAAYTLYEFVSNGSLFDVLHHGSMGNSLDWASRYSIAVGVAQGLSFLHGITSSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSRSTGNFSAVAGSVGYVPPEYAYTMKVTVAGNVYSFGVILLELLTGKPAVTEGTELVKWVLRNSMNKDYIIDSNVSKTSQAVRNQMISILQIALVCVSTSPGSRPKMKSVLRMLLNAR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00024 959 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 219 955 - -
Stsc30295g00024 959 SUPERFAMILY RNI-like 261 569 - -
Stsc30295g00024 959 Gene3D Phosphorylase Kinase; domain 1 669 764 - -
Stsc30295g00024 959 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 332 587 - -
Stsc30295g00024 959 Gene3D Ribonuclease Inhibitor 30 89 IPR032675 -
Stsc30295g00024 959 Pfam Leucine rich repeat N-terminal domain 51 69 IPR013210 -
Stsc30295g00024 959 SMART serkin_6 689 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30295g00024 959 Gene3D Ribonuclease Inhibitor 507 596 IPR032675 -
Stsc30295g00024 959 Gene3D Ribonuclease Inhibitor 431 506 IPR032675 -
Stsc30295g00024 959 PRINTS Leucine-rich repeat signature 389 402 - -
Stsc30295g00024 959 PRINTS Leucine-rich repeat signature 530 543 - -
Stsc30295g00024 959 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 33 191 - -
Stsc30295g00024 959 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 238 331 - -
Stsc30295g00024 959 Gene3D Transferase(Phosphotransferase) domain 1 765 959 - -
Stsc30295g00024 959 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Stsc30295g00024 959 Pfam Leucine rich repeat 511 567 IPR001611 GO:0005515
Stsc30295g00024 959 Pfam Leucine rich repeat 339 399 IPR001611 GO:0005515
Stsc30295g00024 959 SUPERFAMILY L domain-like 59 355 - -
Stsc30295g00024 959 Pfam Protein kinase domain 695 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30295g00024 959 Gene3D Ribonuclease Inhibitor 90 430 IPR032675 -
Stsc30295g00024 959 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 653 764 - -
Stsc30295g00024 959 ProSiteProfiles Protein kinase domain profile. 685 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30295g00024 959 SMART LRR_typ_2 97 120 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 436 459 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 410 433 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 554 576 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 244 268 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 530 553 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 171 195 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 386 409 IPR003591 -
Stsc30295g00024 959 SMART LRR_typ_2 460 484 IPR003591 -
Stsc30295g00024 959 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 959 - -
Stsc30295g00024 959 SUPERFAMILY Protein kinase-like (PK-like) 696 955 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00024 Stsc-Chr30295 107094 110339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00024 150 959 Receptor kinase-like Gene Family AT2G41820 37.470 2.19e-149 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30295g00024 Pkinase 4.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00024 - - adu:107491546 1511.12