Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00015 ATGTTTGGGGAATCATCATCATCAGGAAGGTGGTTGGATTGTGAATTATGGCATGCTTGTGCTGGTTCCATGGTTCAAATGCCACCTCTTAACTCAAAAGTTTTCTACTTTCCACAAGGGCATGCAGAGCATGCTCATGGAGGAAAAGTGGATTTCAGTTTCAAAACAAGAATCCCTCCTTTCATTCCTTGCTGCCTCTCTGGAATCAAATACATGGCAGATTCTGATACTGATGAGGTCTTTGTCAAGTTGTCTTTGACCCCTCTCACTCAACAAAACACTGCCAGTAATGCATTGTTAATGGATTTGGAAGATGGTGATGATTGTGGTAATAACAATAACAATAATGGAGTTGTTGTTGATCAAGAGAAACCTGCTTCATTTGCAAAGACACTGACACAATCTGATGCCAACAATGGTGGAGGCTTCTCAGTGCCTCGTTACTGTGCTGAAACCATATTCCCAAGGCTGGATTATTCTGCTGATCCTCCTGTTCAGAACATTATTGCCAAAGATGTTCATGGAAATTCCTGGAAGTTTAGGCACATCTATAGAGGTACTCCTCGTAGGCACCTCTTGACCACTGGATGGAGCAATTTTGTGAGCCAGAAGAAGCTTGTAGCCGGTGATTCCATTGTGTTCTTGAGAGCTAAGGATGGTGATCTCTGTGTTGGGATAAGGAGGGCCAAGAAGGTGGCAATTGGCGGAGGAGGCGGTGGTGGCGAGGTGCCGGTGTCATCTGTAGTTGAAGCTGTGAGTTGTGGTGTTAATGGAAGGGCATTTGAGGTTGTGTACTATCCAAGGGGAAGCACACCTGAGTTTTGTGTTAAGGCCTCAGTTGTGAGAGATGCAATGAAAGCGAGGTGGTGTTCTGGGATGAGGTTCAAGATGCCCTTTGAGACTGAAGATTCTTCTAGGATCAGTTGGTTCATGGGAACCATCTCTTCTGTTCAGATTCTTGATCCCATTCATTGGCCTGATTCTCCATGGCGTCTTCTTCAGGTGGTTTGGGATGAACCAGAATTACTTCAACATGTCAAGTGTGTAAACCCTTGGTTGGTTGAATTAGTCTCAGACATTCCCACCTACCATCTTTCTCCCTTCTCTCCAGCAAGAAAGAGACCAAGGTTTATTCACAACCAAGATTTTCACCTCATCAGTAACCAACTTCCAATAATGCCAGGATTTCCCAGCAATTATAATAATTATAATTATAATCATGATAATCATCTTGTTATGGATCATTCTTCTAAGTCCCTATTGATGAACATTCAAGAGAGTAACAGTAGTATTGCAGGCATACAGGGAGTCAGGCATGCTCAACTTCTTGATCTGTCTCCATCTGATTTTCCCTTCTTCAACAAGCTTCCATCACAATCACACAACATGCATCTTATTAGTCCTCCTTATTGTGAGACCAATAAGAACAGCAATGCTGATATATCTTGCTTGTTAAGTGTTGGAAATGCTGGCCATAATTTAAAGGAAGAACACAATAATGAAGAAGTGAAATCATCAACACCACCCCATATCTTCTTGTTTGGACAAATGATTCACACTGAACAGCATTGTTCTAGCTCAAATGGGAATAGTTCATCTGATGAAGGGACTTTAGAGAAGACACAATCAAATAATGCTTCTGAATTGCATAGTCCAGTAGAGAACCCTTCTTCTAATGGAGGGTCTCCCTGGTACAAAGATCAGCACAAATCTGGTCTTGGAACAGAAAATGTTAATCTACTTTGCTTGGCTCTATAG 1758 0.4215 MFGESSSSGRWLDCELWHACAGSMVQMPPLNSKVFYFPQGHAEHAHGGKVDFSFKTRIPPFIPCCLSGIKYMADSDTDEVFVKLSLTPLTQQNTASNALLMDLEDGDDCGNNNNNNGVVVDQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNIIAKDVHGNSWKFRHIYRGTPRRHLLTTGWSNFVSQKKLVAGDSIVFLRAKDGDLCVGIRRAKKVAIGGGGGGGEVPVSSVVEAVSCGVNGRAFEVVYYPRGSTPEFCVKASVVRDAMKARWCSGMRFKMPFETEDSSRISWFMGTISSVQILDPIHWPDSPWRLLQVVWDEPELLQHVKCVNPWLVELVSDIPTYHLSPFSPARKRPRFIHNQDFHLISNQLPIMPGFPSNYNNYNYNHDNHLVMDHSSKSLLMNIQESNSSIAGIQGVRHAQLLDLSPSDFPFFNKLPSQSHNMHLISPPYCETNKNSNADISCLLSVGNAGHNLKEEHNNEEVKSSTPPHIFLFGQMIHTEQHCSSSNGNSSSDEGTLEKTQSNNASELHSPVENPSSNGGSPWYKDQHKSGLGTENVNLLCLAL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00015 585 Gene3D - 126 230 IPR015300 -
Stsc30295g00015 585 FunFam Auxin response factor 126 230 - -
Stsc30295g00015 585 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 548 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc30295g00015 585 MobiDBLite consensus disorder prediction 522 565 - -
Stsc30295g00015 585 SMART B3_2 128 230 IPR003340 GO:0003677
Stsc30295g00015 585 SUPERFAMILY DNA-binding pseudobarrel domain 120 229 IPR015300 -
Stsc30295g00015 585 FunFam Auxin response factor 289 362 - -
Stsc30295g00015 585 Coils Coil 585 585 - -
Stsc30295g00015 585 CDD B3_DNA 127 228 IPR003340 GO:0003677
Stsc30295g00015 585 MobiDBLite consensus disorder prediction 522 570 - -
Stsc30295g00015 585 Gene3D - 288 361 - -
Stsc30295g00015 585 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Stsc30295g00015 585 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Stsc30295g00015 585 Pfam Auxin response factor 257 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00015 Stsc-Chr30295 80949 83507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00015 12 575 B3 DNA Binding Superfamily AT4G30080 50.656 1.98e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc30295g00015 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00015 - - ahf:112803082 821.617