Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00014 ATGGATGCAGGTGGAGGATACGTAGTAACTCCAGTTAACAAAGGAAAGCAGTGTGTTGTGAAACACATGCTTGCTGTTGATTGGAAGTTATGGAGATTGTATCTGCGGCCAACTGCATCAAGAACCTTAACGGTTCGGATGCTTGAGAGAGTTGCAGCACTAAGAGAGATGTTCAAATCAAAAGGGGAGGGAGAAATGGTGTTGGATACAGGGATGCCAGCAACTCCAGCATGTGAGAAGGAGGACATGAGTAGTGTTAAGACTGGAGGATCATCAATGGACCTTAGTGGAGTGGAACAGCTTCTTCTGGCTGATGTGGAAGATGATGATGCTCTCAAAGAGTCAACAGGGAGAACTAGTTTGGTTGGGTTGCATGAGTCAGCTGATGAATTCTTTGATGTTCCTGAGCCTATTGACTATGATGATCATCCTGACAATGATTGGCAATTTGACGATCAACCCTTTCAGACTCCATTCCACCCCATCTTACCAACACCTGCTGGTTTTGTCAAAAAGCTGCAAGAACTTGCTGTTCAGAAGAAAGGGTATATGGAAATACAAGACATAGCATTGGAGACGGATGAGCCAGCTTTTGGAACTACTCTTCCAAAAGATTCAACTTGTGAATTACCATGCAGTTGGGCTGAATCTGATCCATCTTTGTATTTAATTCGCGGCCCTACTTATTTAACTGATAATCAAAAGGTGAAGGCAATAGGCTCCTTGATGCAACTAGTGGGCGTGGATTGGCTGCGGTCGAGCACGCGAGAAGATAATCTAAGTAGTCGGCCTAGTAGCATAGTTCAGAAATATGCAGCAGCAGGTGGTTCAGAATTCTTTTTTGTTGTCAACATTCAATTTCCAGGGAATCCATTGTACTCAGTTGCACTGTATTACATGATGAGAGCACCTTTGGAAGACAATCATTTACTGCATAGTTTTGTTGAAGGAGATGATGCCTACAGGAATTCAAGATTTAAGTTGATACCATACATTTCTAAGGGATCATGGGTAGTGAAGCAAAGTGTTGGAAAGAAAGCATGTTTGCTGGGGCAAGCACTAGAAGTACAATATATACGTGGCAAGAACTATTTAGAGCTTGATATCAATGTTGGATCTTCAACAGTTGCAAGTGGGGTTGTCAACCTTGTTCTTGGATACCTTAACAATTTGGTAATAGAAATGGCATTTTTGATACAGGGGAACACACAAGAGGAGCTACCAGAGGGGGTTGAAGTTGAAGGAGAAAAAAAAAAGGGATTCAAAGAGTGCAATCCAATTCCAGTTATAAAGCAATCATTTTTACTTTCAGGGTTCGAGTTTTTAAATAATTTACACACTGACACAAGAAGTATTCAACTCACCGTAAAGAAAGGAAAATCTATCACAGAGAAAATGATTGAGCCAAACTTCGTCGACGACGTAGACTGCGGAAGCTTCTTCGACCACATTGACGACCTCCTCGACTTCCCCGCCGACGACGCTGCCACCGCTGACGCCTCCTTGCCTGTCGGTGCCGCCTGCGCCGGCGGTAACTTTGAAACTCCGGCGAGCTTCTGGTCTTCCGAGTCAAACAGCGCTCTGCCAGTGCCAGTGCCAGCCACAGACACGGCTTTTCCCGGCGGTGACGCCGTGACGGACCTCTCGGCGGAAATCTCCGTTCCGTATGAAGACATTGTGCAGTTGGAATGGCTCTCCACTTTTGTGGAGGACTCTTTCTCTGGTAGGAGCCTTACCATGAAGAAGGTGGACCCACCCTCCACCACCACCTCCAAGGAGGAGGATTTGACTCGTTCCCAATTCAGGACTTCAAGTCCAGTTTCAGTTCTAGAGAGCAGCAGCTCCTGCTCCGTGGAGAAGGTGGCAGCAGCTCAATGCCCGGAGATTTATATCCCTGTTGTGCCTTGTGGCCGAGCACGCAGCAAGCGTCAGCGCCCTGCGAGCTTCAAGCCACATCCGGTGATGCATCTCATCTCCCCTGCTTCCTCTGTTGGTGAGAACACACAGCCTAATGTCATTGTCAAGGCTTCTTCAGATTCTGAGAATTTCGCGGAATCTCATCCAAAGCAAGCTGCTTCTGGTGATCACAAGAAGAAGAAGAAAAGCAAAGCACCTAATCCTTTGGCTGAAGATGATGATAATGATAATGATGGTAACCAGAATGGTGGTGCAGTTAGGAAATGCATGCACTGTGAGATAACAAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCGTGTGGTGTTCGCTACAAGTCAGGCCGGCTCTTCCCCGAATACCGGCCGGCTGCGAGTCCCACATTCTGCCCTGCCGTGCACTCCAATTCACACAAGAAGGTCCTTGAAATGAGAAACAAATTTGGCTGCTCAACTCATGATTCACCTGCTTCTCCTGAACTCATTCCAAACACTTCAAGACTTGGATTGGAATACATGTGA 2457 0.4652 MDAGGGYVVTPVNKGKQCVVKHMLAVDWKLWRLYLRPTASRTLTVRMLERVAALREMFKSKGEGEMVLDTGMPATPACEKEDMSSVKTGGSSMDLSGVEQLLLADVEDDDALKESTGRTSLVGLHESADEFFDVPEPIDYDDHPDNDWQFDDQPFQTPFHPILPTPAGFVKKLQELAVQKKGYMEIQDIALETDEPAFGTTLPKDSTCELPCSWAESDPSLYLIRGPTYLTDNQKVKAIGSLMQLVGVDWLRSSTREDNLSSRPSSIVQKYAAAGGSEFFFVVNIQFPGNPLYSVALYYMMRAPLEDNHLLHSFVEGDDAYRNSRFKLIPYISKGSWVVKQSVGKKACLLGQALEVQYIRGKNYLELDINVGSSTVASGVVNLVLGYLNNLVIEMAFLIQGNTQEELPEGVEVEGEKKKGFKECNPIPVIKQSFLLSGFEFLNNLHTDTRSIQLTVKKGKSITEKMIEPNFVDDVDCGSFFDHIDDLLDFPADDAATADASLPVGAACAGGNFETPASFWSSESNSALPVPVPATDTAFPGGDAVTDLSAEISVPYEDIVQLEWLSTFVEDSFSGRSLTMKKVDPPSTTTSKEEDLTRSQFRTSSPVSVLESSSSCSVEKVAAAQCPEIYIPVVPCGRARSKRQRPASFKPHPVMHLISPASSVGENTQPNVIVKASSDSENFAESHPKQAASGDHKKKKKSKAPNPLAEDDDNDNDGNQNGGAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVLEMRNKFGCSTHDSPASPELIPNTSRLGLEYM 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00014 818 MobiDBLite consensus disorder prediction 679 721 - -
Stsc30295g00014 818 ProSiteProfiles GATA-type zinc finger domain profile. 722 758 IPR000679 GO:0006355|GO:0043565
Stsc30295g00014 818 MobiDBLite consensus disorder prediction 579 600 - -
Stsc30295g00014 818 Gene3D - 724 772 IPR013088 GO:0006355|GO:0008270
Stsc30295g00014 818 FunFam GATA transcription factor 717 802 - -
Stsc30295g00014 818 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 214 410 IPR009769 -
Stsc30295g00014 818 CDD ZnF_GATA 727 784 IPR000679 GO:0006355|GO:0043565
Stsc30295g00014 818 Pfam GATA zinc finger 728 761 IPR000679 GO:0006355|GO:0043565
Stsc30295g00014 818 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 4 410 IPR045096 -
Stsc30295g00014 818 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 726 785 - -
Stsc30295g00014 818 ProSitePatterns GATA-type zinc finger domain. 728 753 IPR000679 GO:0006355|GO:0043565
Stsc30295g00014 818 Gene3D - 3 66 IPR023393 -
Stsc30295g00014 818 SMART GATA_3 722 772 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00014 Stsc-Chr30295 62932 71336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00014 484 792 C2C2-Gata Transcription Factor Family AT4G32890 36.190 1.23e-42 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc30295g00014 DUF1336 5.2e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00014 - - gmx:100802528 490.345