Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30295g00005 ATGGCTTCTAACACATTGATGAGTTCTACTATATCAGCTTTCCCATCTCTTCTTTCTTCCTCAAAGTCAAGATTTGCTACTTCAATTCCAATCTCATGCTTTGGTACTACCAATGTGTCTTCTCGCTTCTCCATGACTGCTGACTGGATGCCAGGCCAGCCTAGACCCCCTTACCTTGATGGTTCAGCTCCAGGTGACTTTGGATTTGACCCTCTTCGTCTTGGAGAACCAGGTATGTTGGTACCAGAGGCATTGGGCTTAGGCAATTGGGTGCAAGCTCAGGAATGGGCTGCGAAACCCGGAGGGCAAGCAACCTACCTTGGAAACCCTGTCCCATGGGGCACCCTCCCCACCATTTTGGTGATTGAATTCCTTGCTATTGCCTTTGTGGAGCACCAAAGGAGCATGGAGAAAGACCCTGAGAAGAAGAAATACCCTGGTGGTGCCTTTGATCCTTTGGGATACTCTAAGGATCCTAAGAAGTTCCACGAATACAAAATCAAAGAAATCAAGAATGGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTGCAACAATCAGCATACCCTGGCACTGGACCATTGGAGAACTTGGCTACTCACTTGGCTGATCCATGGCACAACAACATTGGAAATGTCATCATTCCCTTTTAG 657 0.4718 MASNTLMSSTISAFPSLLSSSKSRFATSIPISCFGTTNVSSRFSMTADWMPGQPRPPYLDGSAPGDFGFDPLRLGEPGMLVPEALGLGNWVQAQEWAAKPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHEYKIKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVIIPF 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30295g00005 218 Pfam Chlorophyll A-B binding protein 75 187 IPR022796 -
Stsc30295g00005 218 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 74 214 IPR001344 GO:0009765|GO:0016020
Stsc30295g00005 218 Gene3D Chlorophyll a/b binding protein domain 50 213 - -
Stsc30295g00005 218 SUPERFAMILY Chlorophyll a-b binding protein 40 216 - -
Stsc30295g00005 218 FunFam Chlorophyll a-b binding protein, chloroplastic 75 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30295g00005 Stsc-Chr30295 16274 17494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30295g00005 1 174 Chloroplast and Mitochondria Gene Families AT3G54890 68.844 4.65e-83 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30295g00005 K08907 - gmx:100305992 391.349