Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30294g00021 ATGAAGAACATTTTCAAGAAGCTTCACAAAGGGACCAACCACGACGCTAACCGCTCCAATGAAGCTTCTGTTTCAAACGCGTCGTCCTCAGTCGCCGTCGATCACCGCGCAGTTCAGAATTCCGGTGCCTCGCCGGCCACTTCTTCTCCTCCTTCTATTTCATCATCGCCGTCTCCGGTCGCCGCGTCGATGCCTTCTGCCGCTTCTACTCCGGAAGCTTCTGCGGCCAAACGGCAGGACTATTTTTCGTCGGAGGAAGACTTTCAGGTTCAGCTTGCGCTCGCCATAAGTGCTTCGTCCAATTCGGACTTCAGCGATGATCCTGAGAAGGATCAGATCCGTGCGGCGACGCTGTTGAGCTTGGGAGGACGTGGAATCGATTCAACAAGGAACGATGACTGTGTGGCGCATGCGCTGTCGAGGCATTATTGGGAATACAGCGTGCTTGACTATGAACAGAAAGTGGTAGATGGTTTTTATGATGTGTATGGGCTTTATACTGATTTAGCAATGCAAGGCAAGATGCCATCTCTAAGAGATCTTGAAGAAGAACCTGAAAGCTCTGGCTTTGAAGTTGTCATAGTTGATCGTAAAATTGATCCTGCTCTTGTAGAGCTGTTGCAAATTGCAGAATGTATTGCATTAGACTGCCCCATCACTAGGGTTGGTATTTTGGTTCAAAGGATTGCTGAACTTGTTACAAGCCATATGGGTGGTTCTGTAAAGGATGCTAGTACTATATTGGCAAGATGGACAGAAAGAAGTACAGAGTTAAGAACATCTCTACACACAATCATGTTGCCTCTCGGGTCAATAAATATTGGGCTCTCCAGACATCGCGCTTTGCTTTTCAAGGTAATAGCTGACAATATCAATATGCCTTGTAAACTGGTTAAAGGCAGTCATTATACTGGTGTTGAGGATGATGCTCTCAACATTATAAAGTCGGAGGATGGAAGGGAGTGTTTGGTTGATCTCATGGCTGCTCCTGGCACACTTATCCCAACTGATATTTCAAATTCAAAAGATCCTTCCTTTAAGCCTTACAATCCCAAGGTCTTACCAAGTTTGCCTTGCACTAAGGAAATTGATTATCCTGACACGAGACCAATGTTATCTCATGGTGAAAGTAGCAGTCATGTTATGAGAGGTGGTTTGCCTCCACTGAATGAAAATTCATGTTTTGACAAGTCAGCTTCAAGCTTTGGTCTGAAAGGAGACACTGGTGTCGGAACTTATAAAATGCCTAATTGTTTGATGTCTAACCAACCAGAAAATAGTGCATCACTATCTGGTGTTTCTCTATACAAGGGGACCCATGGAAATGTGACGGGTGATAGGACTAGATTAAATGTCAACATTGTGCCATATGGCCAGAATAGCACTGATGACTCTCAAAGCCTTTTTGCAGATCTTAATCCCTTCCAGATAAAAGGAATTGGCAAGACCTCTCTGCATAAGAAACCAGGGGCAAATAAAAGTCATGACCTTCAGAATACAAGAAACAATTCTGTCACTGGTCGACCACCTATGCCACCAAAATGGACAAATCATTCTGCTTACAATGAAGTTCCTAGGAACATTAGTTGTGACCCTAATGAACATAACCAACCTTTATTAGCTTCCAGTAGTTCTTCTAAGATTGGACTGAATGGTTCCAAATCACCATACAGTTCAAACTTAAATAATAATAGAAATGCCCAACAATTGGCTCAAGTCACTTGTTCAGTTTCACCATCTTATGCAGGTGAACATAACATGGCTGAAGATCTAAACATTGATTGTAAAAAGGGGGATTTGGAATATTCTCCAAATGACAAGGTTGATGTGGTCAAAGAACATGAAAACATTGATAGTGGTCAACTGGAGCCAAGGAAGTTCACACATGACAGGGTCATGGGGAAAAATATAAAATTAAGGGGTTCAGAGAGTCGAAACTTGTCAGTTGATTCCATTACAAAAGGTGTTGATCGGATATTGGATGATGTAGATGTCAGTGAATGTGAGATTCCATGGGAGGATCTTGTTATTGGAGAAAGAATTGGTCTGGGTTCATATGGTGAGGTATTCCTTGCTGACTGGAATGGGACGGAGGTTGCTGTGAAAAAATTTTTGGAACAGGATTTTTCAGGTGATGCCTTGAATGAATTCAAAAGAGAAGTACGAATAATGCGTAGACTGCGTCATCCAAATGTTGTTCTTTTTATTGGTGCTGTTACACGTCCTCCCAATCTTTCAATCATTACAGAGTTTCTTCCCAGAGGAAGCTTGTATCGGATAATTCATAACAACTGTCAGATTGACGAGAAACAAAGGATTAAGATGGCCCTTGATGTGGCCAGAGGCATGAATTGCTTACATAGCAGCACGCCTACAATTGTTCACCGTGATCTCAAGTCTCCAAATCTTTTGGTAGATAAGAACTGGAATGTTAAGGTCGCTGATTTTGGGTTGTCACGCTTGAAACACAATACGTTCTTGTCATCCAAGTCAACAGGTGGAACGCCCGAATGGATGGCTCCTGAAGTTCTCCGCAACGAACGGTCAAATGAGAAGTGTGACGTGTATAGTTTTGGGGTCATTCTATGGGAGCTTGCCACTCTGAGGCTGCCCTGGAGTGAAATGAATCCTATGCAAGTTGTTGGTGCTGTAGGTTTCCAAAACCGCCGTCTTGATATCCCTAAGGAAGTTGACCCTGTAGTTGCAAGAATAATATGGGAATGCTGGCAACAGGATCCAAATTTGCGTCCATCATTTGCACAGCTCACAGCGGCTTTAAAGCCCCTTCAGCGTCTAGTTATCCCATCCCAGCAAGACCATGTAGCTTTTCCAATACAAGATTTTTCTGAAAATTCTACCCCATGA 2865 0.4321 MKNIFKKLHKGTNHDANRSNEASVSNASSSVAVDHRAVQNSGASPATSSPPSISSSPSPVAASMPSAASTPEASAAKRQDYFSSEEDFQVQLALAISASSNSDFSDDPEKDQIRAATLLSLGGRGIDSTRNDDCVAHALSRHYWEYSVLDYEQKVVDGFYDVYGLYTDLAMQGKMPSLRDLEEEPESSGFEVVIVDRKIDPALVELLQIAECIALDCPITRVGILVQRIAELVTSHMGGSVKDASTILARWTERSTELRTSLHTIMLPLGSINIGLSRHRALLFKVIADNINMPCKLVKGSHYTGVEDDALNIIKSEDGRECLVDLMAAPGTLIPTDISNSKDPSFKPYNPKVLPSLPCTKEIDYPDTRPMLSHGESSSHVMRGGLPPLNENSCFDKSASSFGLKGDTGVGTYKMPNCLMSNQPENSASLSGVSLYKGTHGNVTGDRTRLNVNIVPYGQNSTDDSQSLFADLNPFQIKGIGKTSLHKKPGANKSHDLQNTRNNSVTGRPPMPPKWTNHSAYNEVPRNISCDPNEHNQPLLASSSSSKIGLNGSKSPYSSNLNNNRNAQQLAQVTCSVSPSYAGEHNMAEDLNIDCKKGDLEYSPNDKVDVVKEHENIDSGQLEPRKFTHDRVMGKNIKLRGSESRNLSVDSITKGVDRILDDVDVSECEIPWEDLVIGERIGLGSYGEVFLADWNGTEVAVKKFLEQDFSGDALNEFKREVRIMRRLRHPNVVLFIGAVTRPPNLSIITEFLPRGSLYRIIHNNCQIDEKQRIKMALDVARGMNCLHSSTPTIVHRDLKSPNLLVDKNWNVKVADFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNERSNEKCDVYSFGVILWELATLRLPWSEMNPMQVVGAVGFQNRRLDIPKEVDPVVARIIWECWQQDPNLRPSFAQLTAALKPLQRLVIPSQQDHVAFPIQDFSENSTP 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30294g00021 954 SUPERFAMILY Protein kinase-like (PK-like) 661 923 IPR011009 -
Stsc30294g00021 954 MobiDBLite consensus disorder prediction 520 559 - -
Stsc30294g00021 954 SMART serkin_6 675 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30294g00021 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Stsc30294g00021 954 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 931 - -
Stsc30294g00021 954 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524
Stsc30294g00021 954 MobiDBLite consensus disorder prediction 17 77 - -
Stsc30294g00021 954 CDD STKc_MAP3K-like 681 926 - -
Stsc30294g00021 954 Gene3D Phosphorylase Kinase; domain 1 668 752 - -
Stsc30294g00021 954 MobiDBLite consensus disorder prediction 482 559 - -
Stsc30294g00021 954 FunFam Serine/threonine-protein kinase isoform 1 666 753 - -
Stsc30294g00021 954 FunFam PAS domain-containing protein tyrosine kinase family protein 753 942 - -
Stsc30294g00021 954 Pfam Protein tyrosine and serine/threonine kinase 676 925 IPR001245 GO:0004672|GO:0006468
Stsc30294g00021 954 Gene3D Transferase(Phosphotransferase) domain 1 754 936 - -
Stsc30294g00021 954 Pfam Ethylene-responsive protein kinase Le-CTR1 136 334 - -
Stsc30294g00021 954 ProSiteProfiles Protein kinase domain profile. 675 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30294g00021 954 MobiDBLite consensus disorder prediction 1 80 - -
Stsc30294g00021 954 MobiDBLite consensus disorder prediction 495 510 - -
Stsc30294g00021 954 PRINTS Tyrosine kinase catalytic domain signature 897 919 IPR001245 GO:0004672|GO:0006468
Stsc30294g00021 954 PRINTS Tyrosine kinase catalytic domain signature 834 844 IPR001245 GO:0004672|GO:0006468
Stsc30294g00021 954 PRINTS Tyrosine kinase catalytic domain signature 787 805 IPR001245 GO:0004672|GO:0006468
Stsc30294g00021 954 PRINTS Tyrosine kinase catalytic domain signature 749 762 IPR001245 GO:0004672|GO:0006468
Stsc30294g00021 954 PRINTS Tyrosine kinase catalytic domain signature 853 875 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30294g00021 Stsc-Chr30294 110117 117222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30294g00021 1 910 MAP Kinase Kinase Kinase AT1G08720 54.516 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc30294g00021 PK_Tyr_Ser-Thr 6.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30294g00021 - - aprc:113870732 1228