Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30294g00018 ATGGCTTCATCATCATCTCCTTCTGTTGTGTTTAGGGTGAAAAGGAGCCAACCAGAACTAGTGGCTCCGGCCACACCCATTCCCCATGAAGTTAAACTGCTATCAGACATAGATGATCAAGAAGGGCTACGTATCCATGTTCCTAACATATACATATATCGTCACAATCCATCGATGAAAGGAAAAGACCCTGTAAAGGTGATAAGAGATGGACTCTCAAGAACACTTGTGTTTTACTACCCATTTGCCGGCAGGCTTAGGGAGGGTCATGGCCGCAAGCTGATGGTGGATTGCACTGCAGAAGGTGTTTTGTTCATTGAGGCTGATACTGACGTCACACTCGATCAATTTCGTGAAGCTCTTCAAACCCCGTTCCCTTTCTCTCAAGAATTGCTCTACAATGTTCCTGGCTCGGATGGAATTCTTGGCTCTCCCCTCTTGCTCATACAGGTTCCAGAAATTTTATTTCCAAATGGAAAGGAAAGACACTCTCTTCAAATATGCTTAAAAACTTTCGTGTAA 522 0.4406 MASSSSPSVVFRVKRSQPELVAPATPIPHEVKLLSDIDDQEGLRIHVPNIYIYRHNPSMKGKDPVKVIRDGLSRTLVFYYPFAGRLREGHGRKLMVDCTAEGVLFIEADTDVTLDQFREALQTPFPFSQELLYNVPGSDGILGSPLLLIQVPEILFPNGKERHSLQICLKTFV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30294g00018 173 Gene3D - 11 161 IPR023213 -
Stsc30294g00018 173 PANTHER ACYL TRANSFERASE 4 11 151 - -
Stsc30294g00018 173 Pfam Transferase family 13 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30294g00018 Stsc-Chr30294 104425 104946 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30294g00018 20 151 Monolignol Biosynthesis Gene Families AT5G48930 36.364 6.91e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30294g00018 K19861 - pop:18104173 222.631