LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30294g00010	ATGGGGTGTGTGATTAGCAGGGAAGTGTCTTCTGGTATAATCGCCGAGGTGAAAGAGGAGAAGAATTTCGGTGCTGAGTCTAAGAGCAACAATAATAGTAATAATCATAAGGTTGATGGAGTCGCTGTAGAGGTTCAGAATCAGAATCTGAATCACAATGGTGGGAGCCACGAGGAGAAGGAGAAGGAGGAGAAGAGTGGCGGCGAGGTTCAGAAGCGGAGGGGCGAAAGGAGAAGATCGAAGAAGCCGAATCCGCGGCTGAGCAATCCTCCCAAGCATTTAAGGGGTGAGCAGGTTGCAGCTGGCTGGCCACCGTGGCTCACCGCCGTGTGCGGCGAAGCGCTTAATGGCTGGATTCCTCGGAAGGCTGACACATTTGAGAAGATTGATAAGATCGGGCAAGGAACATATAGTAATGTGTACAAAGCTAAAGACATGATGACAGGGAAAATTGTTGCTCTAAAGAAGGTTCGATTTGATAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTTTGCGGAGATTGGATCATCCCAATGTTGTAAAGTTGCAAGGCTTAGTTACATCAAGGATGTCCTGCAGTTTGTATTTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCACGAATCAGGTTCACAGAACCTCAGGTCAAATGCTACATGCATCAGCTGCTATCTGGGCTTGAGCATTGTCATAACCGACGTGTACTTCACCGTGATATTAAAGGATCAAATCTTCTCGTTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGACTGGCATCTTTGTTTGATCCAAACCATAAGCATCCCATGACTAGTCGTGTAGTAACTCTTTGGTACCGGCCCCCAGAATTGCTTCTTGGTGCCACCGATTATGGTGTGGGTATAGACCTATGGAGTGCCGGCTGTATTTTAGGAGAGTTATTGGCTGGAAAGCCAATAATGCCGGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAATTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTACCTAATGCCACCTTGTTTAAGCCCCGAGAACCATACAAGAGATGCCTGAGAGAGACATTTAAAGATTTTCCACCTTCTGCATTACCCCTTATTGAAAGTCTTCTTGCATTTGATCCTGCCGAACGGAAAACTGCCTCAGATGCTTTGCAAAGTGAGTTCTTCACCACAGAGCCTTATGCTTGCGATCCTTCGACTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAGACGGCAGGATGATGAGGCCAGAAGATTAAGGGCTGCTAGCAAAGCTCAGGCTAATGGTCCAAAGAAGCACCGCACTCGGGATCGTGCCGTGAAAGCTATTCCTGCTCCTGAAGCCAATGCTGAAATTCAATCCAATATTGATAGAAGGCGTCTAATAACTCATGCAAATGCTAAGAGCAAGAGTGAAAAGTTCCCACCACCACATCAAGATGGACAACTTGGATTTCCATTGGGATCTTCCCATCGTATTGATCCAGATACTGTTCCTATTGATGTCTCCTTCACTTCAACAACGTCGTATATTTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATGCTGCTGCTGAAATTGGAGTGCCAAAAAACAAGAAACACACCGCAACTGATGCATTAGATTTGTCAAAACCACATAAAGGTTCACACAAGGATAACCTCAAAGGAAAAAAAACCAGAGCTTAG	1773	0.4495	MGCVISREVSSGIIAEVKEEKNFGAESKSNNNSNNHKVDGVAVEVQNQNLNHNGGSHEEKEKEEKSGGEVQKRRGERRRSKKPNPRLSNPPKHLRGEQVAAGWPPWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDMMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMVHDLAGLAASPRIRFTEPQVKCYMHQLLSGLEHCHNRRVLHRDIKGSNLLVDNEGILKIADFGLASLFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCLRETFKDFPPSALPLIESLLAFDPAERKTASDALQSEFFTTEPYACDPSTLPKYPPTKEMDARRQDDEARRLRAASKAQANGPKKHRTRDRAVKAIPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHRIDPDTVPIDVSFTSTTSYIYSKEPFQAWSGPIGNAAAEIGVPKNKKHTATDALDLSKPHKGSHKDNLKGKKTRA	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30294g00010	590	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	246	258	IPR008271	GO:0004672\|GO:0006468
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	26	53	-	-
	Stsc30294g00010	590	Gene3D	Transferase(Phosphotransferase) domain 1	209	450	-	-
	Stsc30294g00010	590	ProSitePatterns	Protein kinases ATP-binding region signature.	132	155	IPR017441	GO:0005524
	Stsc30294g00010	590	FunFam	probable serine/threonine-protein kinase At1g54610	113	208	-	-
	Stsc30294g00010	590	Gene3D	Phosphorylase Kinase; domain 1	113	208	-	-
	Stsc30294g00010	590	ProSiteProfiles	Protein kinase domain profile.	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30294g00010	590	SMART	serkin_6	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30294g00010	590	Pfam	Protein kinase domain	126	410	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	556	590	-	-
	Stsc30294g00010	590	PANTHER	CELL DIVISION PROTEIN KINASE	124	414	-	-
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	560	578	-	-
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	1	99	-	-
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	428	445	-	-
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	420	461	-	-
	Stsc30294g00010	590	CDD	STKc_CDK9_like	126	410	-	-
	Stsc30294g00010	590	FunFam	probable serine/threonine-protein kinase At1g54610	209	450	-	-
	Stsc30294g00010	590	SUPERFAMILY	Protein kinase-like (PK-like)	120	417	IPR011009	-
	Stsc30294g00010	590	MobiDBLite	consensus disorder prediction	54	74	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30294g00010	Stsc-Chr30294	59323	63064	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30294g00010	118	450	Core Cell Cycle Gene Families	AT5G10270	52.149	5.12e-121	365

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc30294g00010		Pkinase	5.5e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30294g00010	K08819		-	gmx:100786837	997.653