Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30294g00008 ATGGGAGCGCCGAAGAAGAGCGGCGGCGGAGGCGGAGGCAGGGTTTCCGTCTCGGAGGATTCGGACGAGCTGGTTCGTGTTCCCTTACAGGCTATCCTCTTAGCTGACAGCTTCAACACCAAGTTCAGACCTATCACCCTCGAATGCCCGAAGGTCCTCTTGCCTCTCGTGAATATTCCGATGATCAATTACACCTTGACCTGGCTCGAATCCGCCGGCGTCGAAGACGTTTTCGTCTTCTGCTGCGCCCATTCCAAGCAAGTCATCGACTATTTGGACAAATCCGGCTGGCTCTCTCAGCCTAATTTCTCCGTAACCACCATTGAATCGCATAATTCCGTCAGCGCCGGTGACGCCCTCCGCCTAATCTACGAGCGCAACGTGATACATGGAGACTTTGTTCTGATCAGTGGTGATACTGTGAGCAACATGTCGCTTACTCAGGCGCTTGCTGAGCACAAAGAAAGGAAGAAGAAGGATAGTAATGCTGTCATGACAATGGTTATCAAACGCTCAAAAACTAACCCTGTTATTCACCAGTCTCGGCTTGGTACCGATGAGCTTTTCATGGCCATTGATCCCGATACCAAGCAGCTTTTGTATTATGAGGAGAGGACTGACCTTTCCAAAGGGATTTTGCATCTTGACAACTCATTGCTTGCTGATAACCCTTCCCTCACTTTGCACCATGACAAGCAGGATTGTTACATTGACATCTGCTCCCCTGAAGTTCTTAGCCTGTTTACCGACAATTTTGACTACCAACATCTTCGGCGTCATTTTGTGAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTCGTGCATGAAATCCACTCAAACTATGCTGCACGAATTGAAAATTTCCGAAGCTATGACACTGTTAGCAGGGATATAATTCAAAGATGGACATATCCAATGGTGCCAGATGTTATGAATTATGGCAACACAGCTACTAAACTTGAACGGCAGGGAATGTATCGTGCTTCAGAAATATCACAATCACAATCCGCTGTTATTGGCCCCTTCACTGTCATAGGATTTGGCACCAAAATTGGGAATAACACTAAAATTTCAGATTCCGTTATTGGAAAAGGATGTAAAATTGGATCAAACGTTTGCATTAAAGGTTGCTACATATGGGACCATGTCACCATAGAAGATGGCTGTAAACTTAACCATGCTATTGTTTGTAATGAGGTGACTTTGAAGTCAGGAGCTATTCTGGAACCTGGTGTCATTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTTGTTGTCCCTCCGTATTCATATGTATCTCTATTACAACAACCTGTTGAGGAAGACAGTGATGAGGAGCTTGAATATGCTGACAGTACTAGTGTCATCACAAGCAGAGTGGATAAGTCGGATGAAGAGGATGCATCTGAAGTTCCAGAGACACATATTAGCTCTGTTTCAGAGCTAGGTATGGGTGGGGTTGGTTACATCTGGCAAAAATGTGAAGGAAGCCAGGAAGAAGAGTGGAGGCATTCAGTGGCACCTATTCCTGCAGATAAAATTTCTGAGGCTATGAAAACCATGGAAGATGATCTAGAGTTAACTCATGATGGCAGTATTCTCCCACCTTCTGGAGAGCTGATACCTGATTCTAATGATTCAGATGAAGATAATGAAGACTCTAGGGATGATTTCTTTGAGAGAGAGGTTGAAGCAACATTCCTCAGGGCTGTGAATGAAAACATACAAGAAGACCACTTGATCTTAGAAGTTAACTCTTTGAAGTTGTCATGCAATAAGCTGACTGCTGATTGTGCGGGAGCTCTGTTTTATGCTATGATGAAGTATGCAGTAGACACTCCCCATAGTTCACTTGATGGCTTGATGCAGAATGTTAAGGCTGTGCTAACAAAATGGAAGAAGGCTCTTAGATCCTATCTGACAGACATAGATGAGCAGATTGAGATCATACTGAAATTTGAGGAAATTTGTTTAGAATCTGCTAAGGAGTTTACTCCATTGTTCACCAAGATTTTGCTCTACATGTATAATGAAGATATTATTGAAGAAGATGCTATTTTAAGTTGGGAAGATGAGAAGAGAGATGCAGATGAGGCAGATAAAGTATTTGTTAATAAGGCTCAAGATTTGATCCAATGGCTAAAAGTGGCTGAAGAAGAAGACGAATAG 2178 0.433 MGAPKKSGGGGGGRVSVSEDSDELVRVPLQAILLADSFNTKFRPITLECPKVLLPLVNIPMINYTLTWLESAGVEDVFVFCCAHSKQVIDYLDKSGWLSQPNFSVTTIESHNSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALAEHKERKKKDSNAVMTMVIKRSKTNPVIHQSRLGTDELFMAIDPDTKQLLYYEERTDLSKGILHLDNSLLADNPSLTLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSNYAARIENFRSYDTVSRDIIQRWTYPMVPDVMNYGNTATKLERQGMYRASEISQSQSAVIGPFTVIGFGTKIGNNTKISDSVIGKGCKIGSNVCIKGCYIWDHVTIEDGCKLNHAIVCNEVTLKSGAILEPGVILSFKVVVGQEFVVPPYSYVSLLQQPVEEDSDEELEYADSTSVITSRVDKSDEEDASEVPETHISSVSELGMGGVGYIWQKCEGSQEEEWRHSVAPIPADKISEAMKTMEDDLELTHDGSILPPSGELIPDSNDSDEDNEDSRDDFFEREVEATFLRAVNENIQEDHLILEVNSLKLSCNKLTADCAGALFYAMMKYAVDTPHSSLDGLMQNVKAVLTKWKKALRSYLTDIDEQIEIILKFEEICLESAKEFTPLFTKILLYMYNEDIIEEDAILSWEDEKRDADEADKVFVNKAQDLIQWLKVAEEEDE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30294g00008 725 Gene3D - 549 725 - -
Stsc30294g00008 725 SMART 542_3 636 723 IPR003307 GO:0005515
Stsc30294g00008 725 MobiDBLite consensus disorder prediction 445 477 - -
Stsc30294g00008 725 MobiDBLite consensus disorder prediction 531 559 - -
Stsc30294g00008 725 CDD W2_eIF2B_epsilon 559 725 IPR044123 GO:0005085|GO:0031369
Stsc30294g00008 725 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 18 309 IPR029044 -
Stsc30294g00008 725 FunFam Trimeric LpxA-like enzyme 322 455 - -
Stsc30294g00008 725 SUPERFAMILY Trimeric LpxA-like enzymes 274 435 IPR011004 -
Stsc30294g00008 725 CDD LbH_eIF2B_epsilon 347 425 - -
Stsc30294g00008 725 FunFam Translation initiation factor eIF-2B subunit epsilon 18 309 - -
Stsc30294g00008 725 FunFam Translation initiation factor eIF-2B epsilon subunit 551 725 - -
Stsc30294g00008 725 Gene3D Hexapeptide repeat proteins 325 464 - -
Stsc30294g00008 725 CDD eIF-2B_epsilon_N 29 245 IPR035543 -
Stsc30294g00008 725 SUPERFAMILY Nucleotide-diphospho-sugar transferases 26 375 IPR029044 -
Stsc30294g00008 725 MobiDBLite consensus disorder prediction 461 475 - -
Stsc30294g00008 725 SUPERFAMILY ARM repeat 562 721 IPR016024 -
Stsc30294g00008 725 Pfam Nucleotidyl transferase 31 171 IPR005835 GO:0009058
Stsc30294g00008 725 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 16 725 - -
Stsc30294g00008 725 ProSiteProfiles W2 domain profile. 556 725 IPR003307 GO:0005515
Stsc30294g00008 725 Pfam eIF4-gamma/eIF5/eIF2-epsilon 648 725 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30294g00008 Stsc-Chr30294 34317 40422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30294g00008 1 720 Eukaryotic Initiation Factors Gene Family AT2G34970 61.348 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30294g00008 K03240 - gmx:100784894 1172.92