Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30293g00014 ATGGATCATCAGGGTCAGTGTTTGATGATGTGGACTAAGAGGAAGTACTCTACTATTCCAAGAACGAACAACAACACTACTTACCTTTCTTCTTCTTCTTTTGCCGCCGCTGCTTCCTGCTATGAAGTTGAAGAATCATGGGAAGAGAAAGCTTTTGCAAAAGATGCAGCTGGTTACATATGGCCACCGAGATCTTATTCTTGCAGCTTCTGTCGAAGAGAGTTCAGATCCGCTCAAGCTCTTGGTGGTCACATGAATGTTCATAGAAGAGATAGGGCAAGGTTAAAGCAGCACCAACCATCAAGCCCCACCATTAATCATGATCAAGAAATTATTGATGATTATGATGTTCTTCAACCTCATAATCAGCATCATCCAGGTCAAAATAATTCTAATTTTGATTATCTTTATAATAACCCTAATTGTTATTATTATGGTCTTAATCCTATTAAGTATGGTTCATCATCAGTTAGTAATAGCAAGTTATTCAAAGAGGGAAAAACAGTGATTCCACTTCTTAATTCTTCTATTTTCCATGGATGCCTTAAGAGGAGGAGTAGCAGTAGCAATAGCAATAGTAAGAGTATTATTGTTCCTCCTCATCATCATAATTTGGAAACTTTATGTGATGAAGAAGAGAAAAGTGATGATGATGATGATGTGGGTGTGAGATTGAGCTTGTTTGTTCATAGGGCCAAAGAGGAAGAAGATATAATAACTTCTTTCAAGAAGAGAAAAACAGATGATGATTCATCAATCCCAAAATCAACTTCATCAGTTGATGTTAATCATGAATTTAGCCCTAACTTCAGTGAAGAGATGGATCTGGAGCTGAGACTTGGTTATAGTAGTTCCCAGGTATATAGTAGCAAATAA 876 0.3699 MDHQGQCLMMWTKRKYSTIPRTNNNTTYLSSSSFAAAASCYEVEESWEEKAFAKDAAGYIWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQHQPSSPTINHDQEIIDDYDVLQPHNQHHPGQNNSNFDYLYNNPNCYYYGLNPIKYGSSSVSNSKLFKEGKTVIPLLNSSIFHGCLKRRSSSSNSNSKSIIVPPHHHNLETLCDEEEKSDDDDDVGVRLSLFVHRAKEEEDIITSFKKRKTDDDSSIPKSTSSVDVNHEFSPNFSEEMDLELRLGYSSSQVYSSK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30293g00014 291 MobiDBLite consensus disorder prediction 243 266 - -
Stsc30293g00014 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Stsc30293g00014 291 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Stsc30293g00014 291 Gene3D Classic Zinc Finger 63 127 - -
Stsc30293g00014 291 PANTHER OS07G0101800 PROTEIN 44 283 - -
Stsc30293g00014 291 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Stsc30293g00014 291 SMART c2h2final6 66 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30293g00014 Stsc-Chr30293 79845 81094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30293g00014 44 97 C2H2 Transcription Factor Family AT2G37740 85.455 2.15e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30293g00014 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30293g00014 - - aip:107637911 356.681