Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30293g00004 ATGGACCTTCCTACCTTAAGCAAGGGATTGTCCTCTATATTCCATCTTGATTTTGATACTATGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCTAAGAGTGTAAAGCTAAGAAAATCATTTGCGATCCAACGCTGGAATAACTCAGAAGAGAATGTTGGCAACCTTCTCATGCCTTTTACGCTTGATGAGTTTGTGCAAGCTTTTCATGATTATGATTCAAGACTGTTGGGTGAAAAACATGTTGTACTCCTTAAGGTGATAATAAAAGACATTGCAGATGTTGCTAATGCATGA 309 0.3754 MDLPTLSKGLSSIFHLDFDTMQNLESFRDSLCVFPPKSVKLRKSFAIQRWNNSEENVGNLLMPFTLDEFVQAFHDYDSRLLGEKHVVLLKVIIKDIADVANA 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30293g00004 102 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 101 IPR044977 GO:0006357
Stsc30293g00004 102 Pfam DDT domain 27 95 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30293g00004 Stsc-Chr30293 11654 12367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30293g00004 1 100 Homeobox Transcription Factor Family AT1G28420 58.261 1.34e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Stsc30293g00004 DDT 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30293g00004 - - adu:107480767 167.548