Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30293g00002 ATGACCGTGACAAAGCCCAAGCCCAAGCCCAAGCCCAAGCCCATTTACGCTGCAAACCCTAGAACCACACTCGCAATTGTAAATAGCTCTGTGTGTTCTCAAATTAACCTTAGCCAGCGGAGCCTCCCGAATAAAAAATGGCGGGACCAATTGCTTTCGAAGAAGATCGTGAAGAAGAGGGTCAAGAAGTTCAAGAGGCCCCGGAGCGACCGCAAGATCTCCGTTAATGAAAGCTGGCGCAGACCCAAGGGTATTGATTCTCGTGTGAGGAGAAAGTTCAAGGGATGCACTTTGATGCCAAATGTTGGTTACTGA 315 0.4921 MTVTKPKPKPKPKPIYAANPRTTLAIVNSSVCSQINLSQRSLPNKKWRDQLLSKKIVKKRVKKFKRPRSDRKISVNESWRRPKGIDSRVRRKFKGCTLMPNVGY 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30293g00002 104 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 50 104 IPR001515 GO:0003735|GO:0005840|GO:0006412
Stsc30293g00002 104 Pfam Ribosomal protein L32 62 104 IPR001515 GO:0003735|GO:0005840|GO:0006412
Stsc30293g00002 104 SMART Ribosomal_L32e_2 61 104 IPR001515 GO:0003735|GO:0005840|GO:0006412
Stsc30293g00002 104 SUPERFAMILY Ribosomal protein L32e 43 104 IPR036351 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30293g00002 Stsc-Chr30293 7390 9512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30293g00002 51 104 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 81.481 1.17e-26 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30293g00002 K02912 - qsa:O6P43_012890 100.523