Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30290g00011 ATGGTGTCGATTAATGGGATGGAGCAGAACAACGTGATCGCACCGTTCGTTATAAAGACATATCACATGGTCAACGATCCAACCACCGATAAACTGATAGCGTGGGGCCCAGCCAACAACAGCTTCATCGTCGTCGACCCCCTCGACTTCTCTCATTCCTTACTCCCCGCCTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATAGGTGGGAGTTCGCAAACGAGTGGTTCCTCAGAGGCCAGAAACACTTGCTCAAGAATATAGTTAGGAGGAAGCACGCCACGTCCAGGAGCTATAATAACCACCACTACGGTGGAAAGCAGCAGCTTTTGGCGGCGGAGGAGCTTGACGACGAAGCCATGATGGTGGAGATTGCCAGGCTGAAGGAGGAGCAGAAGGCTTTGGAACAAGAGCTTCAAGGGATGAATAGGAGGTTGGAGACAACCGAGAAGAGACCACAGCAAATGATGGCTTTTCTATGCAAGGTCGNNNNNNNNNNCGAGAGGGAGACCAGGCAAATCGCCGAGAAAAAGCGCCGCCTCATCACCACCACCGCCACCTCCTCCTCTTCCTCCTCCGGGGTCGCCGTAAAGACGGAACTCGACGACGACGAACCAACTGTCGGGAATATAATATCTTCTTCGCCGGAGGCCGATGATTTTTGCCACGTGGCGGCGCCGGTGGCCATGGGGTGGTTGGAGCAGCAGAGGCCGAGGATTATTGGTCATCACTACCAACATCAGGGGCATAATAATGGATATATGAATTATAACAATTGTAATTATAGTTGCGCTGCCATGCCAAAGCCGTTGAGTGTGGTGGCTCCGGCGGTGGCGCCGCCGCAAGTTGGGAGTTTAGGATGTGAGTCTAATGGCCCTGGTGGTGGTAAAGATCACGTGAACTTTTTTAGTGAAATGGCGGCGGAGAATAGTCCACGGCCTCCTTATCCGTTTTCCCTATTAGAAGGTGGATTCTAA 1020 0.5157 MVSINGMEQNNVIAPFVIKTYHMVNDPTTDKLIAWGPANNSFIVVDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKHATSRSYNNHHYGGKQQLLAAEELDDEAMMVEIARLKEEQKALEQELQGMNRRLETTEKRPQQMMAFLCKVXXXXERETRQIAEKKRRLITTTATSSSSSSGVAVKTELDDDEPTVGNIISSSPEADDFCHVAAPVAMGWLEQQRPRIIGHHYQHQGHNNGYMNYNNCNYSCAAMPKPLSVVAPAVAPPQVGSLGCESNGPGGGKDHVNFFSEMAAENSPRPPYPFSLLEGGF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30290g00011 339 Coils Coil 132 166 - -
Stsc30290g00011 339 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Stsc30290g00011 339 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 Gene3D - 8 106 IPR036388 -
Stsc30290g00011 339 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30290g00011 339 FunFam Heat stress transcription factor B-4 8 106 - -
Stsc30290g00011 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 207 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30290g00011 Stsc-Chr30290 96488 97958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30290g00011 12 203 HSF AT3G24520 59.314 3.24e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc30290g00011 HSF_DNA-bind 3.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30290g00011 K09419 - gmx:100794896 344.739