Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30289g00012 ATGGCTGACCAGCAAAAAGATCTCGCTCACAAAACTCTTCGTCACAGCGATGCACTCTACCAGTATATACTTGAAACAAATGTGTATCCAGGGGAACACGAGAGCTTGAAGGAGCTCCGTGAGACGACAGAAAAGCACCCTCTTTACATCATGGCTACACCACCGGACGAAGGACAACTTCTAAGGATGTTCGTTAAACTGATAAACGCAAAGAACACCATGGAAATTGGTGTCTACACTGGTTACTCTTTGCTTGCTACTGCCCTTGCTCTTCCTGATGATGGAAAGGCCGTCGGTAGTAATCCGTCAATAACAAATTCGTCGGTAAGTTATACCGACGGCCCCGATAAGCCGTCAGTATAA 363 0.4628 MADQQKDLAHKTLRHSDALYQYILETNVYPGEHESLKELRETTEKHPLYIMATPPDEGQLLRMFVKLINAKNTMEIGVYTGYSLLATALALPDDGKAVGSNPSITNSSVSYTDGPDKPSV 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30289g00012 120 MobiDBLite consensus disorder prediction 96 120 - -
Stsc30289g00012 120 MobiDBLite consensus disorder prediction 99 120 - -
Stsc30289g00012 120 Pfam O-methyltransferase 26 99 IPR002935 GO:0008171
Stsc30289g00012 120 Gene3D Vaccinia Virus protein VP39 2 109 IPR029063 -
Stsc30289g00012 120 PANTHER O-METHYLTRANSFERASE-RELATED 9 98 - -
Stsc30289g00012 120 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 16 99 IPR029063 -
Stsc30289g00012 120 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 12 120 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30289g00012 Stsc-Chr30289 129479 130863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30289g00012 4 106 Monolignol Biosynthesis Gene Families AT4G34050 65.049 5.48e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30289g00012 K00588 - gmx:100795858 152.525