Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30288g00013 ATGGAGAAGAACCTTTCTTCAGATAGCAGAGATCTAATGGAAGCGCTGATAAGAGGACGTGGTTTTGCAAATCAACTTCTTCAAGTTGTTGGTAGTAATAACAATAATAATAATGGAGAAGAGGTAATAATAGCTGAAGATCTTCTGAGAAAGGTACTCAGATCTTTCAACAACACCATTCTGCTTTTAAATGGTGATTCACTTTCCAATGGTGGAGCTTCCTCAGCAAGTCCAAAACCTAAAAAGTTTGAAGGAAATAGAACCTTCAATAATCAACCATCAAGGTACAAAAAAAGGAAAACTTTATCAACACCAACATGGGAGAAGGAAAGCTCAACTCTTATGGATGATGGCTATGCTTGGAGAAAATATGGACAAAAACTTCTACTAAATTCCAATTACCTCAGGAACTACTTCAGGTGTAGTTACAAGTTTGATGAAGGTTGTGAAGCAACCAAACAGGTTCAAAGAATTCAAGAGGATCCTCCATTGTACCGTACAACATATCATGGCTACCACACTTGCAAGAACAAATTGTTACAAAATTACCCAAATGATGATGAGATGATACAGATGGATTATTATTATTACTGTGATTCTCCTCAACAAGATTCTTGTTGCATGGTGCTTGATTTCAGTGATCCTTTAATTTCCCAATAA 660 0.3621 MEKNLSSDSRDLMEALIRGRGFANQLLQVVGSNNNNNNGEEVIIAEDLLRKVLRSFNNTILLLNGDSLSNGGASSASPKPKKFEGNRTFNNQPSRYKKRKTLSTPTWEKESSTLMDDGYAWRKYGQKLLLNSNYLRNYFRCSYKFDEGCEATKQVQRIQEDPPLYRTTYHGYHTCKNKLLQNYPNDDEMIQMDYYYYCDSPQQDSCCMVLDFSDPLISQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30288g00013 219 SMART WRKY_cls 115 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30288g00013 219 ProSiteProfiles WRKY domain profile. 110 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30288g00013 219 Pfam WRKY DNA -binding domain 116 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30288g00013 219 SUPERFAMILY WRKY DNA-binding domain 112 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30288g00013 219 Gene3D WRKY domain 102 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30288g00013 219 MobiDBLite consensus disorder prediction 71 104 - -
Stsc30288g00013 219 MobiDBLite consensus disorder prediction 84 104 - -
Stsc30288g00013 219 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 33 182 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30288g00013 Stsc-Chr30288 111173 114394 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30288g00013 13 186 WRKY Transcription Factor Family AT5G01900 36.364 7.04e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30288g00013 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30288g00013 - - aip:107610898 167.548