Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30288g00002 ATGGTGGCAGCCTCATACTCTTTTTACATAAATTGTGGGGGAGGAAAGGTAGCAACAAAGAATGGAAAGACATATAATGATGACACAGATGAAGGAGGAGCAGCTAAGTTCTATCACAAAGAAAATACAATCTGGGCATTCAGCAGCACCGGTAACTACTTGGAAAGCAAAAATCCGAACTATATTCCACCTATTGATGAGTCTGATAAGCTCTCTTTAAACAATAACAATAATAATGATGATGCTGAGCTCTACACCAATGCACGTGCATCTCCTCTTTCTTTGACTTATTATGGATTTTGCCTTGGAAATGGAAACTACACTGTGGATCTCCATTTTGCTGAGATTGTGTTTACACATGATCAAACATATAAGAGCCTTGGAAGGCGTATATTTGACATCTACATTCAGGGAAACCTAGTGCAAAAGGACTTCAACATTGCAGAAGCAGCAGGAGGCATTGGTAAGGCAGTTATAAAATCATTTAATGCAAGTGTGATTAATGGAACCTTAGAGATTCGCCTTTATTGGGCTGGAAAGGGAACAACTGCTATCCCACAAAAATCAATTTATGGTCCTCTTATATCAGCCATATCTGTTTACACTGATCATGGAAATGGAAGTGGAATATCAGCAGCTGCTGTGGCTGGAATTGTTGTTGGCGTGGTAGTTATTATTGTCTTGATGATATTTGCCATACTTTGGCGGAAAGGCTGTCTGGGAAAGAGAAATTCTTCTACACAAGAACTACAGGGCTTAGAGTTGCAAACTGGTATGTTTTCTGTAAGACAAATCAAAATGGCAACAAATAACTTCGACAGAGTTAACAAGATTGGAGAAGGAGGATTTGGTCCCGTGTATAAGGGAAAGTTACCCAATGGTATCATAATTGCAGTGAAGCAACTTTCTTCAAAATCAATGCAAGGGAATCGTGAGTTCTTAAATGAAATAGGCGCAGAAGAACACCAAATAGAGTTGGATTGGCAAACAAGAAAAAAGATTTGTATTGGTATCGCTCGAGGGTTAGCATATCTCCATGAAGAGTCAAGAGTGAAGGTAGTTCATAGAGATATCAAAGCCACTAATGTCTTACTTGACGAAGATCTCAACTCTAAAATATCAGATTTTGGCTTGGCAAAACTTGACGAAGAAGACAACACTCATATTAGCACTCGAATTGCTGGAACATAG 1191 0.3896 MVAASYSFYINCGGGKVATKNGKTYNDDTDEGGAAKFYHKENTIWAFSSTGNYLESKNPNYIPPIDESDKLSLNNNNNNDDAELYTNARASPLSLTYYGFCLGNGNYTVDLHFAEIVFTHDQTYKSLGRRIFDIYIQGNLVQKDFNIAEAAGGIGKAVIKSFNASVINGTLEIRLYWAGKGTTAIPQKSIYGPLISAISVYTDHGNGSGISAAAVAGIVVGVVVIIVLMIFAILWRKGCLGKRNSSTQELQGLELQTGMFSVRQIKMATNNFDRVNKIGEGGFGPVYKGKLPNGIIIAVKQLSSKSMQGNREFLNEIGAEEHQIELDWQTRKKICIGIARGLAYLHEESRVKVVHRDIKATNVLLDEDLNSKISDFGLAKLDEEDNTHISTRIAGT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30288g00002 396 Pfam Malectin domain 8 198 IPR021720 -
Stsc30288g00002 396 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 36 318 - -
Stsc30288g00002 396 FunFam Os07g0541700 protein 312 396 - -
Stsc30288g00002 396 Gene3D Phosphorylase Kinase; domain 1 237 319 - -
Stsc30288g00002 396 Pfam Protein kinase domain 326 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30288g00002 396 SMART tyrkin_6 272 396 IPR020635 GO:0004713|GO:0006468
Stsc30288g00002 396 Gene3D - 3 204 - -
Stsc30288g00002 396 ProSiteProfiles Protein kinase domain profile. 198 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30288g00002 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 353 365 IPR008271 GO:0004672|GO:0006468
Stsc30288g00002 396 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 5 203 - -
Stsc30288g00002 396 SUPERFAMILY Protein kinase-like (PK-like) 249 396 IPR011009 -
Stsc30288g00002 396 Gene3D Transferase(Phosphotransferase) domain 1 320 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30288g00002 Stsc-Chr30288 5816 10346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30288g00002 3 396 Receptor kinase-like Gene Family AT1G53430 51.364 3.18e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30288g00002 Malectin 8.1e-45 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30288g00002 - - ahf:112703562 580.482