Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30288g00001 ATGGCTCCAGAATACGCTATGCATGGTCAATTAACCGACAAAGCAGACATATATAGTTTTGGAATTGTTGCCTTCGAAATTGTAAGTGGAAAAAGCAATACAACCAATCGACATGATGATGAAGGGGCATTCGTTTTACTTGATTGGGCACGTTTGTTGAGAGAGAAAGGTGATATAATGGAAATAGTTGATAGAAGATTATTATTGGATTCAAAGTTGAAGAAGGAGGAGGTGATGGTGATGATCGATGTTGCTTTCTTATGCACTAATGTATCTCCAACACTTAGGCCTACAATGTCTTCAGTGGTAAGCATGCTAGAAGGCAAAACCATTGTTCCAAAACTAGTTTCAGATTCATTTGATGAGAAGAAATTGGAAGCATTGCAAATGTATTATAACCAAGATCACCAAAGTACCTCAACAATGGAGGTGCCATTGACTTCTTCATCTACTTCTACAGCGCAAGATTTGTATTCAGTTCACCTAAACTCTTCTTACTTGGAGAGTAGAAATTAA 516 0.374 MAPEYAMHGQLTDKADIYSFGIVAFEIVSGKSNTTNRHDDEGAFVLLDWARLLREKGDIMEIVDRRLLLDSKLKKEEVMVMIDVAFLCTNVSPTLRPTMSSVVSMLEGKTIVPKLVSDSFDEKKLEALQMYYNQDHQSTSTMEVPLTSSSTSTAQDLYSVHLNSSYLESRN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30288g00001 171 Pfam Protein tyrosine and serine/threonine kinase 1 106 IPR001245 GO:0004672|GO:0006468
Stsc30288g00001 171 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Stsc30288g00001 171 SUPERFAMILY Protein kinase-like (PK-like) 1 143 IPR011009 -
Stsc30288g00001 171 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30288g00001 171 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30288g00001 Stsc-Chr30288 4750 5619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30288g00001 1 152 Receptor kinase-like Gene Family AT1G07650 52.532 2.38e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30288g00001 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30288g00001 - - ahf:112703562 274.633