Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30287g00010 ATGAACTACGGAAGGCTTGGTCCTGCTGACTCATCATCTCAACCTGATGAGACTCCGGTAGCCACTAGGCCGAGATCCTCTACAACTGGCAACACCAAACTTATACTGTTCTTGCTTCTTGCTATTCTTCTCATTGTCGCTTCTGCCGTCTCCGCCGTACTTGTAACCGTCGTCCGATCTCGCGCTTCGGATGCCGGAGAAAAGCTACCTACGCTGTCTGGCAAGCCGACGGAGGCGATCTCACGCACCTGCAGCAGGACGAGGTTCCCGGAGCTCTGCGTTAACTCGCTTCTTGATTTTCCGGGATCCACGGCGGCGACGGAGCGGGACTTAGTCCACATTTCCTTCAACATGACGCTACAGCACTTTACTAAAGCTCTCTACACCTCCGCCGCGATTTCCTCCTCCGGTGTCTACGCCGCCATGGATCCACGCTCTCGTGCCGCATACGACGACTGCCTTGAGCTTCTCGACGAGTCCGTTGACGCCATAGCGCGATCTCTCACTACGGTCTCTCCCTCCGGCACTTCCCCCGGTGGCACCGTACGACCGCTTGGATCGTCCTCGGAAGACGTGATCACGTGGCTGAGCGCAGCGCTCACGAACCAGGACACGTGCGCCGAGGGGATAGACGGTGCCTCCGGCGCGATGAAGAGCCAGATGGCGAACAACCTGAAGGACTTGTCGGAGCTGGTGAGTAACTGTTTGGCGATATTCTCGGCCTCCGCCGGCGGCGATGACTTCTCCGGTGTTCCTATACAGAACCGGAGAAGGTTGATGGCAATGCGAGAGGAAGAGAAGGCGGAGAAGGAGGATTTACCAAAGTGGCTGAGTAAAAGAGATAGGAGGTTGTTGAGTTTACCGGTTTNNNNNNNNNNGATAGTCTCAAAGGACGGCAACGGCTCCATCAAAACGATCACCGAAGCCATTAAGAAGGTGCCGGAGTATGGTAACCGGCGATTTGTTATTTACATCAAGGCAGGAAGGTACGAAGAGGACAATTTAAAGGTGGGAAGGAAGAAAACCAACGTTATGATCATAGGGGATGGCAAGGGCAAAACGGTAATCACGGGGGGTAGAAACGTTTTGCAGGAAATGACCACATTTCATACTGCCTCCTTTGCTGCAAGTGGTGCTGGATTCATCGCCAGAGACATCACATTTGAGAACTACGCCGGCCCAGCGAAGCACCAAGCGGTGGCTCTCCGCCTCAGCTCCGACCACGCGGTGGTTTACCGCTGCAACGTCATAGGCTACCAAGACACATGCTACGTTCACTCAAACCGTCAATTCTTCAGAGAATGTGACATATACGGTACGGTAGATTTCATTTTTGGCAACGCTGCAGTGGTTTTCCAAAACAGCAGCCTCTACGCTCGAAAGCCCATGGACATGCAAAAAAATACAATAACGGCCCAAAACAGAAAAGATCCAAATCAAAACACGGGCATTTCGATCCATAACTGTCGGATCCTAGCCACACCAGATCTCGAGGCGTCAAAAGGTAGCTTCCCAACATATCTTGGCCGTCCATGGAAGATGTACGCTAGGACCGTCTACATGATTTCATACATGGGTGATCACGTGCATCCACGTGGGTGGTTGGAGTGGAACACAAGTAATTTTGCACTTGACACGTGTTATTACGGCGAGTACATGAATTATGGGCCGGGTGCTGCCATTGGTCAACGGGTTAAATGGGCCGGGTATCGGATGATCACGTCCACCGTGGAAGCTAGCAGGTTCACGGTGTCCCAATTCATTTCCGGCTCGTCGTGGCTGCCGTCCACCGGAGTGGCATTTGTTGCTGGCCTATCAACCTGA 1824 0.5285 MNYGRLGPADSSSQPDETPVATRPRSSTTGNTKLILFLLLAILLIVASAVSAVLVTVVRSRASDAGEKLPTLSGKPTEAISRTCSRTRFPELCVNSLLDFPGSTAATERDLVHISFNMTLQHFTKALYTSAAISSSGVYAAMDPRSRAAYDDCLELLDESVDAIARSLTTVSPSGTSPGGTVRPLGSSSEDVITWLSAALTNQDTCAEGIDGASGAMKSQMANNLKDLSELVSNCLAIFSASAGGDDFSGVPIQNRRRLMAMREEEKAEKEDLPKWLSKRDRRLLSLPVXXXXIVSKDGNGSIKTITEAIKKVPEYGNRRFVIYIKAGRYEEDNLKVGRKKTNVMIIGDGKGKTVITGGRNVLQEMTTFHTASFAASGAGFIARDITFENYAGPAKHQAVALRLSSDHAVVYRCNVIGYQDTCYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNSSLYARKPMDMQKNTITAQNRKDPNQNTGISIHNCRILATPDLEASKGSFPTYLGRPWKMYARTVYMISYMGDHVHPRGWLEWNTSNFALDTCYYGEYMNYGPGAAIGQRVKWAGYRMITSTVEASRFTVSQFISGSSWLPSTGVAFVAGLST 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30287g00010 607 FunFam Pectinesterase 287 605 - -
Stsc30287g00010 607 Gene3D - 289 605 IPR012334 -
Stsc30287g00010 607 SUPERFAMILY Pectin lyase-like 290 604 IPR011050 -
Stsc30287g00010 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 76 241 IPR035513 -
Stsc30287g00010 607 FunFam Pectinesterase 76 242 - -
Stsc30287g00010 607 PANTHER PECTINESTERASE 47 595 - -
Stsc30287g00010 607 SMART PMEI_2 75 238 IPR006501 GO:0004857
Stsc30287g00010 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 240 IPR035513 -
Stsc30287g00010 607 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30287g00010 607 Pfam Pectinesterase 294 590 IPR000070 GO:0030599|GO:0042545
Stsc30287g00010 607 ProSitePatterns Pectinesterase signature 2. 437 446 IPR033131 -
Stsc30287g00010 607 CDD PMEI-like_3 84 241 - -
Stsc30287g00010 607 NCBIfam pectinesterase inhibitor domain 65 239 IPR006501 GO:0004857
Stsc30287g00010 607 Pfam Plant invertase/pectin methylesterase inhibitor 79 238 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30287g00010 Stsc-Chr30287 60465 66737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30287g00010 1 606 Carbohydrate Esterase AT5G53370 62.255 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30287g00010 - - gmx:100808236 825.854