Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30285g00012 ATGGAAAGTGGGGGAGGAAGATATGAATGTGAGTATGTGACCAACACGGCCCTGATTTGGCCACTGTCTCCGTGGCCACGCCAGTTGCTGGGGGGTACTGCCTTGAAGATCCAAATAAGGGGCTTCGAGAGTGATAGACAACACACCTATGAGAAGGATGTTCATACGGTGTTCGTGGATAATCTTCCAGGAGAAGTGAGAAAGGGTGATCTATATCGCGAGTTCGGAAATGATGGGTTTGTAAAGGACACATACATCTCCAGAAAACAGAGAGCTAATTTGAAATGCCCGTTTGCATTTGTAAGATTTGACTCACTCGATGGAGTGATAAGAGCAATTGACACATTGAATAGTTACTTTTGGAGGGGAAGAAAACTATTCATCTCACTAACAAAATATAGGAGATGGGAGAGTAGCAATGCCAAGACTCAAGCGTGGGTTCCCATCAGAAACAGAGAGACAAGGTCGAGTGCTGTGAACGACATAAAGAGACTAGGGAAGATGAAGAAGGTATGGGTGGAAGTTCAGAAGAAGAAAACGGGTTCTATCTCTTCTCTCTCTCTTTCTACGATGAGGCCGATCGCCCCTTTCTCTCCTCGCCCTGCTGCTTCTCCGAGTTCTTCTGTTTCTCCGAGATCCGTCGGGAGTGTTCATCGAGAGCGCTCACGATCCCCTCGTACGCCAGTGCCGCCTACGGCCCCTGCTCCTGTTCCTGGACCGGTGTACCCCGTGCCGCGTACACCGATGTGTGATGCTAGGCGATACCGTAGCCTCTTCTCTCGTCACAGAGTTACACCTCCTCCCCCTTCTCCTCCGCCTAGTGACAAAAAGCCTTCCGCGGGAACGTACGACCCAGCAGCAGAATTGGAAGGAGATCCCGACGAGCCTTATGTTGCTGAGCGAGTACCATACGGAGCCCCCGAGGCATATTATTCCGATGCCTCAGACGGGTCAGAGCGCGAGAGCGCTAGTGTTGGTTCGGCACCGTCCAGTCACCATTCTTCCGGCAGTTCTTCCGGAAGCACGTCCCTGGGTTATGGGTCCGCTTCGAGCGGATCGGCGAGCGACGGAGCATCAGACGATGATCTGGTGAACCGCTATTTTGCCGGGACATTTCCTCCACCCTAG 1128 0.5204 MESGGGRYECEYVTNTALIWPLSPWPRQLLGGTALKIQIRGFESDRQHTYEKDVHTVFVDNLPGEVRKGDLYREFGNDGFVKDTYISRKQRANLKCPFAFVRFDSLDGVIRAIDTLNSYFWRGRKLFISLTKYRRWESSNAKTQAWVPIRNRETRSSAVNDIKRLGKMKKVWVEVQKKKTGSISSLSLSTMRPIAPFSPRPAASPSSSVSPRSVGSVHRERSRSPRTPVPPTAPAPVPGPVYPVPRTPMCDARRYRSLFSRHRVTPPPPSPPPSDKKPSAGTYDPAAELEGDPDEPYVAERVPYGAPEAYYSDASDGSERESASVGSAPSSHHSSGSSSGSTSLGYGSASSGSASDGASDDDLVNRYFAGTFPPP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30285g00012 375 Gene3D - 38 170 IPR012677 -
Stsc30285g00012 375 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 56 254 - -
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 201 215 - -
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 197 248 - -
Stsc30285g00012 375 SMART rrm1_1 56 129 IPR000504 GO:0003723
Stsc30285g00012 375 SUPERFAMILY RNA-binding domain, RBD 46 134 IPR035979 GO:0003676
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 227 245 - -
Stsc30285g00012 375 CDD RRM_SF 57 129 - -
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 317 358 - -
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 260 375 - -
Stsc30285g00012 375 MobiDBLite consensus disorder prediction 264 278 - -
Stsc30285g00012 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Stsc30285g00012 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30285g00012 Stsc-Chr30285 113415 115583 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30285g00012 56 117 Eukaryotic Initiation Factors Gene Family AT1G22760 32.258 8.05e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30285g00012 - K13126 ahf:112794598 82.8037