Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30283g00029 ATGATTCAAGAATTGTTCTCAGCTGGTGCTGGCTATGTATCACCACCTGACAAGAAATTCTCCATTAACAACAATCTTAATAATGCGGGAGGAGGACTTCTCTTACCACCAACACCACCGCCTTCTTCTTCTTCTACCACACCCGCTACTACGGTTGTCGCCGCCGCCACCTCATCAAATAGTTCGGAGAACCACCAGCAGAATCTGAGGTGCCCGCGATGCGATTCATCCAACACAAAGTTCTGTTACTACAACAACTACAACCTTACTCAGCCTCGCCATTTCTGCAAGACATGCCGAAGGTACTGGACTAAAGGCGGTGCTCTCAGGAACGTTCCAATCGGCGGTGGATGCCGGAAAAACAAGAACATCGGTGTGTCCAACTCGTCAGCGGCAAAGGCTTCAAGCGCCACCCCGAAGATGAAAGCTGTGGTGGCATCAGAGCTCAGAAAATCATCATCATCATCATCAGTTGGAGTAATCGACCACCATGATCTTCCAGCAGGACCAATCTTATGGGGATCTCCACAGAATAGTCACCTATTGGCTTTACTCAGAGCTAGCCATAGCCATAGCCAGAGCCAAAACCCTAACCCTAACCCTAGCTCCATGCTGATGAACGGTGTTTCAGTGAAGGAAGAACGGAACTTAATGGGATTATCATCCCATCACAACATGGTGAGTACTACTACAGAGCCATTGATGATGAATAACAATATTTCAAGAACCCTAGGGTATGATGGAGTTGGACAGATTCCTCAATTGGATCTGTGCAGCTCTCTGTGGAGAAACAATAATAATAACAATCAAGATCATCATCATCAACCTGCTACTGCCTTTCTACTTGCTGAACAACAACAAAGCAATGGAATTCAACAACTTTACCACAAGCTCAGGTCAGCCCCTAATAATTCATCGCCAATCTTCTTGCCAAACATAATGAATGCTTCTTCCTCTTCCTCCTCTTCTTTATCCACCATTTTGGAGTCATCTTCGGTTTCCGCCGCTGAATTGGGCTGCTGGAATCCGTCCCTTCCCTGGCTTTCTGATCTTCCTGCAGCAACCAATGGTGCATACCCTAATTAA 1086 0.4641 MIQELFSAGAGYVSPPDKKFSINNNLNNAGGGLLLPPTPPPSSSSTTPATTVVAAATSSNSSENHQQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVSNSSAAKASSATPKMKAVVASELRKSSSSSSVGVIDHHDLPAGPILWGSPQNSHLLALLRASHSHSQSQNPNPNPSSMLMNGVSVKEERNLMGLSSHHNMVSTTTEPLMMNNNISRTLGYDGVGQIPQLDLCSSLWRNNNNNNQDHHHQPATAFLLAEQQQSNGIQQLYHKLRSAPNNSSPIFLPNIMNASSSSSSSLSTILESSSVSAAELGCWNPSLPWLSDLPAATNGAYPN 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30283g00029 361 ProSitePatterns Zinc finger Dof-type signature. 71 107 IPR003851 GO:0003677|GO:0006355
Stsc30283g00029 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 59 267 IPR045174 GO:0003700|GO:0006355
Stsc30283g00029 361 MobiDBLite consensus disorder prediction 31 70 - -
Stsc30283g00029 361 Pfam Dof domain, zinc finger 67 123 IPR003851 GO:0003677|GO:0006355
Stsc30283g00029 361 ProSiteProfiles Zinc finger Dof-type profile. 69 123 IPR003851 GO:0003677|GO:0006355
Stsc30283g00029 361 MobiDBLite consensus disorder prediction 45 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30283g00029 Stsc-Chr30283 135909 137598 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30283g00029 69 140 C2C2-Dof Transcription Factor Family AT5G60200 75.000 3.81e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30283g00029 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30283g00029 - - adu:107487764 444.506