LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30283g00025	ATGTCATTTTCCTTGTTTTCAACACCGCAGCAACAGCAATCGCCTTTCCAGCAGACTAGCTTGTTTCAGCAGCCGCAACAGCAGCAGCAACAGCTCCAACTTCAATTTCAGCAGCAACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGTTGTTTCTGTTCACCAACGATAAAACTCCCGCTACTTACAGTACCAACTGGTCCGATCTACACCCTGATTCCCAGAAGTTTCTTCTTCAGATCGAGGAGCGGATATTGGAGTATCGGGATGAAAGCCAGAGGCTAGATCAATGTAGTCGTCTGTATGATTCTTCTGTTTCCAACGATGGCTTTGAGCTTGATGCTAGCCATATTGTTCAGGAGCTTGGTGGAATCAGCACTGGAATGGAAAGACAGAAAACTGTGTTGCTGGAACTGATGTCTGTTGTCAAGGATATGTTACGCAACACTGAGGTAGCTGTTCGTTCTTTTATGATGCTACGCCCAAGGTTCCTTCATCCCAGTGGGGGTGCATCAAGTGCCACTGCCCCATCACAGACTCCTGGTGCAACTGCATCATCTGGTCCAAGTAGCCAACCAACTGCTACATCTATAGTGCCTGTTTTCGATTTCTATAGTGGTCTTCCAAAGAAACCATCACCTTTTTTACAGCAAACAGTTTTAAGATTTGAGAAGTATCTTGGTGAATGTCATCAGTGGATTGATGAATTGGAGCAACTTATTCTTTTGGACTCTGAGAGAAATGGTTCTGCTAATGGATCCTCATTGTTGCAGTCTCTTCCCAAAGTCATGACAAATGTGCATGATTTTTTTGTTCATGTTGCTGCAAAGGTGGAGAGCATACATCAGTATATTGAATCTATGAAATCAGCATACCTAGCTGATCAACGCCGACGGGGTGAGGTGAATGATCCATTTTTAGAGGCTGATCGACGAGAAACTGCAAGACAAGAAGCAGCCTCAAAAAGAGTTCATCCAACGCTGCATTTACCTGCAAATTCACAGCCCTCAACTCAAGTTGCAGGGTTGTTTTCTAGTTCAGGAACTCAAGGAGCATTGGCTGCCCCACAGACATCAGCAGCAACTACATCATCATCAGGAAGCGGACTCTCTCTTTTTAGTACACCTTCTGCTCCATCATCTTCTATGCCATCGTCTTTGTTTGCAACCCCATCAACTCCTGCCCTGGGGTCCTCTTGGTTTGGATCATCTACTGCTACACCTCAAACCTCACTTTTTGGTTCTACATCATCCTCCTTACCTGGTCCTGCTTCAACTCCTTCTTTGTTCAGTAATACTGCTCCATTGTTCAGTTCAACTCCAGCTGGAAATTCGCTGTTCTCAAGTTCATTTGTGTCAGGTGCTGCAACAGGATCCGGTGCAAGCTTTGGAGGATCTAAAAATCCACGGCCAAAATCCAGAACTGCTCGCCGGTAA	1449	0.4569	MSFSLFSTPQQQQSPFQQTSLFQQPQQQQQQLQLQFQQQQQQQQQQQQQQQQQQLFLFTNDKTPATYSTNWSDLHPDSQKFLLQIEERILEYRDESQRLDQCSRLYDSSVSNDGFELDASHIVQELGGISTGMERQKTVLLELMSVVKDMLRNTEVAVRSFMMLRPRFLHPSGGASSATAPSQTPGATASSGPSSQPTATSIVPVFDFYSGLPKKPSPFLQQTVLRFEKYLGECHQWIDELEQLILLDSERNGSANGSSLLQSLPKVMTNVHDFFVHVAAKVESIHQYIESMKSAYLADQRRRGEVNDPFLEADRRETARQEAASKRVHPTLHLPANSQPSTQVAGLFSSSGTQGALAAPQTSAATTSSSGSGLSLFSTPSAPSSSMPSSLFATPSTPALGSSWFGSSTATPQTSLFGSTSSSLPGPASTPSLFSNTAPLFSSTPAGNSLFSSSFVSGAATGSGASFGGSKNPRPKSRTARR	482

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30283g00025	482	Gene3D	-	215	305	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	461	482	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	1	22	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	175	198	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	172	198	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	308	380	-	-
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	308	327	-	-
	Stsc30283g00025	482	Coils	Coil	27	54	-	-
	Stsc30283g00025	482	PANTHER	NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1	5	441	IPR024882	GO:0005643\|GO:0006913\|GO:0008139\|GO:0017056
	Stsc30283g00025	482	MobiDBLite	consensus disorder prediction	332	380	-	-

Showing 1 to 10 of 10 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30283g00025	Stsc-Chr30283	113038	118043	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30283g00025	55	482	NAC Transcription Factor Family	AT4G37130	64.773	2.88e-180	513

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30283g00025	K14307		-	gmx:100776992	646.736

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