Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30283g00024 ATGCCCTCCTCCGACTCCGGCGAAAGCCGTAGATCAACCAAGCCTCACAACCCTTCCCTACCTCCACCGCCGGCCGAGCAAGAGCACCTGCCGTGCCCTCGCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGAACTCTCCGTGACATTCCCGTCGGCGGTGGGAGCCGCAAAAACGCCAAGCGCTCCCGCACCGTTCCTTCTGCCTCCACCACCACAAGCTCCTCCTCCGCGGGCGCCGCCGTCTCCTCGGTTTCTTCTATGGCCCCGATCACTATGGTTCCCGTTGCCGGCAACAACCACCACGGAGATCCCGTGCAGTTCGGTGGAGTAGTTATGGATGGTGAAGCAAAGAGTAACAGCGTGAGCTTGTGCGGTGGAAGCTTCTCTTCGTTGCTGAGCAACGCACAGCAAGGTCCTGCTGGGTTTCTTGCTCTGGGTGGGTTTGGGCTTGGGCTTGGGCCTGGCCTCGAAGATGTTGGGTTTGGAATGGGGATGGGGAGAGCGGGGTGGGCTTTCCCGGGCATGGTTGCGGACGGAGGCAGCATTGGCGGGAGCGTTGGAGGCTCTGGCGTTGGGCACACGTGGCAGTTTGAAGGCGGCGATCAAGGTGGTTTTGTTGCCGGAGACTGCTTCCCTTGGCCGGGACTTGCCATTTCCACACCCGGAAATGGTCTGAAATAA 753 0.6016 MPSSDSGESRRSTKPHNPSLPPPPAEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTVPSASTTTSSSSAGAAVSSVSSMAPITMVPVAGNNHHGDPVQFGGVVMDGEAKSNSVSLCGGSFSSLLSNAQQGPAGFLALGGFGLGLGPGLEDVGFGMGMGRAGWAFPGMVADGGSIGGSVGGSGVGHTWQFEGGDQGGFVAGDCFPWPGLAISTPGNGLK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30283g00024 250 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 123 IPR045174 GO:0003700|GO:0006355
Stsc30283g00024 250 MobiDBLite consensus disorder prediction 1 32 - -
Stsc30283g00024 250 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Stsc30283g00024 250 MobiDBLite consensus disorder prediction 71 104 - -
Stsc30283g00024 250 MobiDBLite consensus disorder prediction 84 104 - -
Stsc30283g00024 250 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Stsc30283g00024 250 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30283g00024 Stsc-Chr30283 109753 111258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30283g00024 1 250 C2C2-Dof Transcription Factor Family AT3G50410 47.727 1.46e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30283g00024 zf-Dof 3.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30283g00024 - - aip:107620759 333.183