Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30283g00003 ATGAAATGGTTTACGACATCACCTTCCTTATCTTGCAGCAAAGACACACAGCCACAGACTTGTGATGCTTCATTTGCTGCAAATCTTCAAGTTTCTAGAAAACGAGCCAAACTTGAAGTTCGTCGGGCAGATACACATGCTTTGCAAGTGGAAAGAAAAGATGCAAATCACTCTATTGCTCTTGAGACTGACCTTGGGTTCTTTAAGAATCAGGATACGTTGAGCCTATTAGCCGCTGAGAATGGTAAACATGAAGATGTTAGGGAGGTATCGGCTGCAAACGATTTACCTAGTAATGTGGCCAATAAATGGAATGAAATTGTAGTTGAGTCTGCCGATTCGGATTGCTTGCCCAAAGGAATGGAATTAACACCTGTGAGTGAAATGGCTGTTTCAAAATTGGTAGAGCCTGGTAGTAAGAATCGACAATGTATAGCTTACATTGAAGCTAAGGGAAGACAGTGTGTGAGATGGGCAAATGATGGTGATGTTTACTGTTGTGTGCATTTGTCCTCTCGATTTTTGGGCAGCTCAGAAAAAGCTGAGAAGCTGGTTCCAGTTGATACTCCTATGTGTGAAGGTACTACTGTTCTGGGTACAAAATGTAAGCACCGTGCCCTACCTGGTTTTTTATTCTGTAAGAAACACAGGCCTCATGCTGAAACAGAACAGATCTCACATTTACCACAAAGTACCCTGAAAAGGAAACATGACGAGAATTATGCCGGTTCAGAGAACACCTGCAGAGACATTGTATTGGTAAATTCTGAAAGCCCACTGGAAGTGGAGCCAGTGTCATCCATTGGCGGTGATTACTTGCATGGCAAAAGCAACTTCAGTGAGACTCCCACATGTCCTGATAATAATTATGATGCAATGAAGGGTCTGCATTGTATTGGTTCTCCTCCCTTTGATGACAAGAATCCATGTAGAGAAGCTCCTAAGCGATATTGCTTGTATTGTGAAAATCATCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGGAAGAGTAGAATTGTATCGAAAGAAGTGTTCACAGAACTCTTGAGGGACTGTAGCTCATGGGAGCAAAAAGTGCATTTGCATAAAGCATGTGAGCTTTTCTACAGGCTGTTCAAAAGCATTTTATCACTAAGAAACCCAGTTCCTAAGGATGTTCAATTCCAATGGGCTTTGACCGAAGCCTCTAAAGATATTAGTGTAGGAGAATTCTTTACAAAGTTGGTACATAGTGAGAAGGCTAGAATCAAACTAATTTGGGGATTCAGTGATGACTTGGAAGTACCTCCTATCATGGAAGAATCACCACCTTTGCCATCCACAACTAATGATAGCATTGATAACGAAAATGCCATTAAGTGTAAGATATGCTCTGCTGAATTCGGTGATGATCAAGCTCTTGGTAACCATTGGATGGATAGTCATAAAAAGGAAGCACAATGGCTGTTTAGGGGTCATGCATGTGCCATTTGTCTGGATTCTTTTACTAACAGGAAACTGTTGGAAACCCATGTTCAAGAGCGACACCATGTGCAGTTTGTTGAACAGTGTATGCTTCTACAATGTATTCCTTGCGGTAGTCATTTTGGAAACAGTGAGCAATTATGGCAGCATGTTTTATCAGTTCATCCTGTTGATTTAAAGCCATCGAAGGCTCCTGAGCGGCTAACTCTCCCTACTGGGGCTGGTCAAGATTCTCCAGTAAAACATGACCAGGAAAACTCTGCTCCTTTGGAGAATAATTCTGAGAATCCAGGTGCCTTGCGCAAGTTCACTTGCAGGTTTTGTGGTTTGAAATTTGATTTGCTACCTGACCTTGGTCGACATCACCAAGCTGCCCATATGGGGCCCAATCTAGTTAGCAACAACAACCCTGCTAAGAAGGGAGTTCGCTACTATGCATATAGATTAAAGTCTGGTAGACTTAGCCGTCCTAAATTTAAAAAAGGTTTGGCAGCAGCTTCATATAGAATCAGAAATAGAGCTAATGCTAATCTAAAGAGAGGCATTCAAGCAACAAAATCACTTGGCATGAGGGAAACTTCCTTACAACCTCGTGTAACATCATTACAACCTCACGCGACAACATCTTTACAACCTCATGTAACTGAAACATCAAAGATTAGTAAATTCACTGAACATCAGTGCTCAGCAGTTGCAAAAATTTTATTTTCTGAGATTCAGAAGACTAAACCTCGGCCCAACAATCTTGATATTCTATCAATTGCTCGCATGGCTTGCTGCAAAGTTAGTCTTGCAGCCTCACTTNNNNNNNNNNGAATATATTTGAAGGCAGCAAAACTTTGTGCTGAGCATAATATTATTGTAAATTGGCACCATGAGGGGTTTATTTGTCCTAGAGGCTGCAAGGATTTGAAGGATCATGCATTGCTCTCTCCCTTATCATCTCTTCCTAATAGTTTTGTAAGGCCAAAACCTGTAAATTTATCAGATCATGCAAGTGATGAGTGGGAACTGGATGAATTTCATTGCATCATCAATTCACATGGTTTAAAGTTAGGGTCACTACAAAAATCTACCATCTTGTGTGATGATATAAGCTTCGGGAAGGAATCATCTCCTGTGATTTGTGTAGTAGATCAAGAACTTCTGCATTCTATCAATATGAATGGTTCCAATGATCAAGATACTGACTCTTCTATGCCTTGGAAGAGCTTTACCTATGTTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTTCCTGCTCATATTCTTCCTGTTGTCCTGAAACATGTGACCATGTATACCTTTTTGGTAATGACTATGATGATGCAAACGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGACGAGAATGGTCGAATAATATTGGAGGAAGGATACCTTGTCTATGAGTGTAACCAAATGTGCAGATGCAATAAGTCCTGTCCAAACAGAATATTGCAGAATGGAGTACGAGTCAAGTTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGGTGTCAGGGCTGGGGAGGCTATTCTACGCGGCACATTTGTGTGCGAGTACATTGGAGAGACTTTAGATGTTCAGGAGGCACACAACAGGCGCAAGAGATATGGCACAGAAAATTGCAGTTATTTCTATGACATGGATGATCATGTTAACGATATGAGCAGATTGATTGAAGGGCAAGCCCAATTTGTAATAGATGCTACTAAATATGGAAATGTGTCTAGGTTCATCAATCATAGCTGCTCCCCAAATCTTGTGAATCACCAAGTTCTAGTGGAGAGCATGGATTGCGAGCGTGCACACATCGGTCTTTATGCGAGTCGAGATATTGCTCTGGGGGAAGAGCTGACACATGACTATCATTATAAGCTTGTGGATGGAGAAGGATCGCCATGCCTTTGCGGCGCTTCCAAGTGCAGGGGACGCCTTTACTAG 3447 0.4149 MKWFTTSPSLSCSKDTQPQTCDASFAANLQVSRKRAKLEVRRADTHALQVERKDANHSIALETDLGFFKNQDTLSLLAAENGKHEDVREVSAANDLPSNVANKWNEIVVESADSDCLPKGMELTPVSEMAVSKLVEPGSKNRQCIAYIEAKGRQCVRWANDGDVYCCVHLSSRFLGSSEKAEKLVPVDTPMCEGTTVLGTKCKHRALPGFLFCKKHRPHAETEQISHLPQSTLKRKHDENYAGSENTCRDIVLVNSESPLEVEPVSSIGGDYLHGKSNFSETPTCPDNNYDAMKGLHCIGSPPFDDKNPCREAPKRYCLYCENHLPSWLKRARNGKSRIVSKEVFTELLRDCSSWEQKVHLHKACELFYRLFKSILSLRNPVPKDVQFQWALTEASKDISVGEFFTKLVHSEKARIKLIWGFSDDLEVPPIMEESPPLPSTTNDSIDNENAIKCKICSAEFGDDQALGNHWMDSHKKEAQWLFRGHACAICLDSFTNRKLLETHVQERHHVQFVEQCMLLQCIPCGSHFGNSEQLWQHVLSVHPVDLKPSKAPERLTLPTGAGQDSPVKHDQENSAPLENNSENPGALRKFTCRFCGLKFDLLPDLGRHHQAAHMGPNLVSNNNPAKKGVRYYAYRLKSGRLSRPKFKKGLAAASYRIRNRANANLKRGIQATKSLGMRETSLQPRVTSLQPHATTSLQPHVTETSKISKFTEHQCSAVAKILFSEIQKTKPRPNNLDILSIARMACCKVSLAASLXXXXIYLKAAKLCAEHNIIVNWHHEGFICPRGCKDLKDHALLSPLSSLPNSFVRPKPVNLSDHASDEWELDEFHCIINSHGLKLGSLQKSTILCDDISFGKESSPVICVVDQELLHSINMNGSNDQDTDSSMPWKSFTYVTKPMLDQSLSLDSESLQLGCSCSYSSCCPETCDHVYLFGNDYDDANDIFGKPMRGRFPYDENGRIILEEGYLVYECNQMCRCNKSCPNRILQNGVRVKLEVFKTEKKGWGVRAGEAILRGTFVCEYIGETLDVQEAHNRRKRYGTENCSYFYDMDDHVNDMSRLIEGQAQFVIDATKYGNVSRFINHSCSPNLVNHQVLVESMDCERAHIGLYASRDIALGEELTHDYHYKLVDGEGSPCLCGASKCRGRLY 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30283g00003 1148 Gene3D SET domain 842 1148 IPR046341 -
Stsc30283g00003 1148 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1148 - -
Stsc30283g00003 1148 ProSiteProfiles Zinc finger C2H2 type domain profile. 591 619 IPR013087 -
Stsc30283g00003 1148 MobiDBLite consensus disorder prediction 550 583 - -
Stsc30283g00003 1148 Gene3D Classic Zinc Finger 452 510 - -
Stsc30283g00003 1148 SMART set_7 993 1131 IPR001214 GO:0005515
Stsc30283g00003 1148 SMART c2h2final6 452 475 IPR013087 -
Stsc30283g00003 1148 SMART c2h2final6 486 509 IPR013087 -
Stsc30283g00003 1148 SMART c2h2final6 520 543 IPR013087 -
Stsc30283g00003 1148 SMART c2h2final6 591 614 IPR013087 -
Stsc30283g00003 1148 Pfam Pre-SET motif 854 985 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30283g00003 1148 ProSitePatterns Zinc finger C2H2 type domain signature. 522 543 IPR013087 -
Stsc30283g00003 1148 MobiDBLite consensus disorder prediction 567 583 - -
Stsc30283g00003 1148 SMART preset_2 850 977 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30283g00003 1148 SUPERFAMILY SET domain 843 1138 IPR046341 -
Stsc30283g00003 1148 Pfam Zinc finger C2H2-type, 3 repeats 488 615 IPR040689 -
Stsc30283g00003 1148 ProSitePatterns Zinc finger C2H2 type domain signature. 454 475 IPR013087 -
Stsc30283g00003 1148 ProSitePatterns Zinc finger C2H2 type domain signature. 593 614 IPR013087 -
Stsc30283g00003 1148 ProSiteProfiles Pre-SET domain profile. 914 990 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc30283g00003 1148 Pfam SET domain 1004 1124 IPR001214 GO:0005515
Stsc30283g00003 1148 ProSiteProfiles SET domain profile. 993 1125 IPR001214 GO:0005515
Stsc30283g00003 1148 ProSiteProfiles Post-SET domain profile. 1132 1148 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30283g00003 Stsc-Chr30283 11512 16281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30283g00003 2 1147 C2H2 Transcription Factor Family AT2G23740 48.672 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30283g00003 Pre-SET 1.3e-15 No_clan