Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30281g00014 ATGACAAGTTCTTTCTTCTCTCAACTCATTTCCGAGAACAACAACCTTGGATTCTCCAAAAGTCCTAAAGGTTTGTTGTTGGATACCGTTAGATCGGAGTTTATGACTATCTCGCCGCCTTCTTTTCCGTTCTCTCCATCTTCTTTCTTTGGTTTTCATCACGATGATTTGAGCCTTGCTGAGCTTCTCGACTCTCCTATTCTCAGTAACCATGAGGCATATGAAATCAGTGTGGTGAAAGCTGAGAACTTATCATTGTCATCTATTCAAAGCTTCAAGAATGAGATCTTTTCTGTCCAAAATGACAAGGATTTTCAATCAAATTATGATCATCATCTTCATCCAAAGGTACAAATCTTAAGTAGAAGATCTGAAGATGGTTACAATTGGAGGAAATATGGGCAAAAGCAAATGAAAGGGAGTGAAAATCCTAGAAGTTATTACAAATGCTCATACCCTAATTGCCCTACAAAGAAGAAGGTTGAGAGATCTTTGTTAGATGGACAAATAACTGAGATAATTTATAAAGGCACCCATAACCATCCAAAGCCGAAATCTATTAGGGGAAACTCATCATCTTTTGTATCTTCACTGGAAATAGATACTGATGTCAACCTAGGAGAATCATCATTGTCTATGGATAATGATGATGAGAAGACTAAAACAGGAGCTAATGATTTCTACGAGGATGAACCTAATGCAAAGAGATGGAGAATAGAGGGTGAAAATGAGGATATATCAGCAGCAGGGGAAAGTAGAACAGCACCAAGAGTAGTTATTCAAACAAGAAGTGAGATTGATATTCTAGATGATGGGTATAGGTGGAGGAAATACGGCCAGAAGGTTGTCAAGGGAAATCTAAATCCAAGGAGTTACTACAAATGTACAAGCCTAGGGTGTCCTGTGAGAAAGCACATAGAGAGGGCCTCAAATGACCGAAAGGCAGTGATCACAACTTATGAAGGAAACCACAACCATGAAGTCCCTCCGCCACGTGCTACCCATTCTATACCCCGAGGCACCACAAACAACACCACCACCAACAATTCTCTTCAAGCTTTTATAATACCTAGTGAAGGGCAATCAAGTAATTTCAACATAGGTATGAGCCATCATAACCCGGGAAGTTTTGGATTTTCAGGGTTTGGCAATAAACAAATGGAGTCTTACATGATGAATAACCAAGCAAAGGAAGAACCAAGAGATGATTATTACTCTTTTCTTGAATCATTGCTATAG 1239 0.3914 MTSSFFSQLISENNNLGFSKSPKGLLLDTVRSEFMTISPPSFPFSPSSFFGFHHDDLSLAELLDSPILSNHEAYEISVVKAENLSLSSIQSFKNEIFSVQNDKDFQSNYDHHLHPKVQILSRRSEDGYNWRKYGQKQMKGSENPRSYYKCSYPNCPTKKKVERSLLDGQITEIIYKGTHNHPKPKSIRGNSSSFVSSLEIDTDVNLGESSLSMDNDDEKTKTGANDFYEDEPNAKRWRIEGENEDISAAGESRTAPRVVIQTRSEIDILDDGYRWRKYGQKVVKGNLNPRSYYKCTSLGCPVRKHIERASNDRKAVITTYEGNHNHEVPPPRATHSIPRGTTNNTTTNNSLQAFIIPSEGQSSNFNIGMSHHNPGSFGFSGFGNKQMESYMMNNQAKEEPRDDYYSFLESLL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30281g00014 412 MobiDBLite consensus disorder prediction 212 228 - -
Stsc30281g00014 412 SUPERFAMILY WRKY DNA-binding domain 123 184 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 Pfam WRKY DNA -binding domain 270 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 Pfam WRKY DNA -binding domain 125 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 350 IPR044810 GO:0003700
Stsc30281g00014 412 ProSiteProfiles WRKY domain profile. 264 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 ProSiteProfiles WRKY domain profile. 125 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 MobiDBLite consensus disorder prediction 207 228 - -
Stsc30281g00014 412 FunFam WRKY transcription factor 57 255 329 - -
Stsc30281g00014 412 Gene3D WRKY domain 113 185 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 Gene3D WRKY domain 254 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 FunFam WRKY transcription factor 114 185 - -
Stsc30281g00014 412 SUPERFAMILY WRKY DNA-binding domain 261 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 SMART WRKY_cls 269 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30281g00014 412 SMART WRKY_cls 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30281g00014 Stsc-Chr30281 113297 119067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30281g00014 122 412 WRKY Transcription Factor Family AT2G38470 45.906 1.08e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30281g00014 WRKY 4.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30281g00014 K13424 - qsa:O6P43_014117 376.326