LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30280g00009	ATGCTTACAGAAAGAGAAGCTTCTGCACTCTCTGGGCATGATGAAGTGGTGTCGGTGTTCCCAGATCCAATATTGCAATTGCATACAACAAGATCTTGGGATTTCTTGGATTCAGATTTGGGGATGAACAACATCACTAGTAGTGCATATCAACATCAACATCTGTCCATTAAAAGTGATATCATTGTTGGAATCATCGACACTGGGATATGGCCAGAGTCTCCAAGTTTTAGAGATGAGGGTATAGGGAAGATTCCTTCAACATGGAAAGGAGTTTGCATGGAGGGTCCTGATTTCAAGAAATCCAATTGCAATAGAAAATTAATAGGAGCAAGATACTATAATAATATCCAAGTTACATCATCAAGTGGTGGAAAGAACCTAACTGATACGAAATTAGGAGTAACCAATAACAAAGGGTCCCCAAGAGATTCTGTTGGACATGGAACACACACTTCATCAATAGCAGCTGGTGCCATTGTCAACAATGCTAGCTATTATGGTTTAGCAAAAGGAATAGCAAGAGGTGGTTCACCTTCTACTAGAATTGCTGCATACAAAACATGCTCTGAACAAGGTTGCTCTGGTGCCACCATATTGAAAGCCATTGATGATGCTATTAAGGATGGAGTTGACATAATCTCCATTTCAATTGGCCTTAGCTCGCTAATTCAGTCGGACTTTTTGAATGATCCGATCGCCATCGGTGCGTTCCATGCCGAGCAAGCCGGGGTCATGGTGGTTTGCTCGGCCGGGAACGATGGCCCGGATCCTTATACAGTTGTCAATACTGCACCATGGATATTTACAGTTGCAGCTTCGAATATTGATAGGAACTTCCTATCAACTATTGTCCTTGGAAACGGAAAAATATTTCAAGGTATAGGCATTAATTTCTCAAACCTGACGCGTTCAAAGTTGTATCCTCTTGTCTTAGCGGAGGAAGTTGCTGCTAAATTTGCCCCTGCTTCCGAAGCTAGGAATTGTTATCCTGGATCACTAGATTACAGCAAAGTTGCAGGGAAGATTGTTGTTTGTGTGAATGATGATCCAACTATTTCAAGGAGAATCAAGAAGCTTGTTTTACAAGATGCAAAAGCCATAGGGATGATACTCATTGATGAGGAGAACCAAGATGTTCCCTTTGATGCAGATGTATTTCCTTTTTCAGAGGTTACCAATCTTCAAGGTCATCAGATCCTTCACTATATAAACTCTACAAAGAATCCAACTGTAACAATTCTTGGAACAACAGAAGTTACAGGATACAAGCCCTCACCTATTGTTGCATCTTTCTCATCTAGAGGTCCTTCAGCCCTTACAGAGAACATTCTCAAGCCAGATGTCATGGCTCCAGGCGTTGGCATTTTAGGTGCCATGATTCCCAAAAGTGATGAAGCAGGAAGTAGTGTTCCAATTGGAGAAAAACCATCCTCATTTGGCATAAGGTCAGGTACATCCATGGCTTGCCCACATGTTACAGGTGCTGCTGCTTTCATTAAATCTGTACATAGAATGTGGACTCCTTCAATGATCAAATCAGCATTGATGACAACAGCAACAACATACAATAACTTAAGGAAGCATGTGACAAATAGCTCAAACTTGTATGCAAGCCAACATGAAATGGGAGTTGGAGAAATTGATCCACTTAGAGCCCTCAATCCTGGTTTAGTCTTCAAAACAGAACTACAAGACTATCTCAAATTTCTTTGTTATTATGGCTATTCAAAGAAGAGCATAAGATCAATGTCTAACACTAACTTCAACTGCCCAAAGAACTCCTCTGAAGATCTTATATCCAACATCAATTACCCATCAATATCTATAAAAACACTTAGTAGGCATCAGAGACCAAGAGTAGTCACAAGAACAGTCACAAATGTGGGACCCACTAATGCCACATATATTGCAAAGGTTCAAGCACCAAAGGGAATGGTTGCCAAGGTTGTCCCTAACAAGCTTGTATTTTATGGGAGTATTCAAAAGTTGTCTTATCAAGTCTCATTCTACAACAATGATGCAACAAGTGGGTACAAATTTGGGTCCATAACTTGGCTTCATGGTCAGCATTATGTACATACAATGTTTGCTGTCAATACTAAATGA	2109	0.4045	MLTEREASALSGHDEVVSVFPDPILQLHTTRSWDFLDSDLGMNNITSSAYQHQHLSIKSDIIVGIIDTGIWPESPSFRDEGIGKIPSTWKGVCMEGPDFKKSNCNRKLIGARYYNNIQVTSSSGGKNLTDTKLGVTNNKGSPRDSVGHGTHTSSIAAGAIVNNASYYGLAKGIARGGSPSTRIAAYKTCSEQGCSGATILKAIDDAIKDGVDIISISIGLSSLIQSDFLNDPIAIGAFHAEQAGVMVVCSAGNDGPDPYTVVNTAPWIFTVAASNIDRNFLSTIVLGNGKIFQGIGINFSNLTRSKLYPLVLAEEVAAKFAPASEARNCYPGSLDYSKVAGKIVVCVNDDPTISRRIKKLVLQDAKAIGMILIDEENQDVPFDADVFPFSEVTNLQGHQILHYINSTKNPTVTILGTTEVTGYKPSPIVASFSSRGPSALTENILKPDVMAPGVGILGAMIPKSDEAGSSVPIGEKPSSFGIRSGTSMACPHVTGAAAFIKSVHRMWTPSMIKSALMTTATTYNNLRKHVTNSSNLYASQHEMGVGEIDPLRALNPGLVFKTELQDYLKFLCYYGYSKKSIRSMSNTNFNCPKNSSEDLISNINYPSISIKTLSRHQRPRVVTRTVTNVGPTNATYIAKVQAPKGMVAKVVPNKLVFYGSIQKLSYQVSFYNNDATSGYKFGSITWLHGQHYVHTMFAVNTK	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30280g00009	702	ProSitePatterns	Serine proteases, subtilase family, serine active site.	485	495	IPR023828	-
	Stsc30280g00009	702	ProSiteProfiles	Serine proteases, subtilase domain profile.	32	554	-	-
	Stsc30280g00009	702	SUPERFAMILY	Subtilisin-like	48	558	IPR036852	GO:0004252\|GO:0006508
	Stsc30280g00009	702	Pfam	Subtilase family	59	525	IPR000209	GO:0006508\|GO:0008236
	Stsc30280g00009	702	CDD	Peptidases_S8_3	25	521	IPR034197	-
	Stsc30280g00009	702	Pfam	Fibronectin type-III domain	602	699	IPR041469	-
	Stsc30280g00009	702	FunFam	Subtilisin-like protease SBT1.5	60	287	-	-
	Stsc30280g00009	702	FunFam	subtilisin-like protease SBT1.5	277	421	-	-
	Stsc30280g00009	702	Gene3D	-	277	421	-	-
	Stsc30280g00009	702	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	1	695	IPR045051	-
	Stsc30280g00009	702	Gene3D	-	571	701	-	-
	Stsc30280g00009	702	Gene3D	Peptidase S8/S53 domain	60	567	IPR036852	GO:0004252\|GO:0006508
	Stsc30280g00009	702	MobiDBLite	consensus disorder prediction	128	149	-	-
	Stsc30280g00009	702	PRINTS	Subtilisin serine protease family (S8) signature	144	157	IPR015500	-
	Stsc30280g00009	702	PRINTS	Subtilisin serine protease family (S8) signature	58	77	IPR015500	-
	Stsc30280g00009	702	PRINTS	Subtilisin serine protease family (S8) signature	484	500	IPR015500	-
	Stsc30280g00009	702	CDD	PA_subtilisin_like	283	414	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30280g00009	Stsc-Chr30280	54781	66245	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30280g00009	2	702	Subtilisin-like Serine Gene Family	AT1G20150	44.398	0.0	583

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30280g00009	K25898		-	gmx:100781053	1055.82