Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30279g00017 ATGGAAGCTCTTTTGTGCAGAAAACTGGGTGATCCATCGTTATCTTTGGAGGACGATAACAGCCCAATAATTGTGTCCAAGAACCATCCAATTCCTCAGTTGAAGTCTCCGACTTCTGTCAGAGTCAGAATCAAAGCAACAAGCTTGAATTTTGCAAATTACTTGCAGATCCAAGGTAAGTATCAAGAGAAAGCGTCTTTGCCATTCATACCTGGATCCGATTACTCGGGAATCGTTGACGCCGTTGGCCCCAAAGTTTCAAACTTTCGTGTTGGGGACCCTGTTTGTTCCTTTGCTGCTCTTGGTTCATTCGCCGAGTTCATTGTAGTTGACGAGAACCAGTTGTTTCGTGTGCCAGAAGGTTGTGATCTTGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGTACTTCTCATGTAGCACTTGTCCATAGAGCTAAATTGGCCTCCGCTCAGGTGTTGCTGGTTTTGGGTGCAGCAGGAGGTGTAGGGCTTGCAGCTGTTCAAATTGGAAAAGCATGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGTGCAGATTTTGAAGTCTCTTGGTGTTGATCATGTGGTGGACTTGGGCAGTGAAAATGTTATTGAGAGTGTGAAAGAGTTCCTTAAGGCTAGAAGGCTTAAAGGTGTTGATGTGCTCTATGACCCAGTTGGTGGCAAGCTTACTAAAGAAAGTATGAAACTTCTGAAATGGGGAGCTCAGATTCTCATAATTGGGTTTGCGAGCGGCGAAATTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTTCATGGTCTTTATTGGGGTAGCTACAAGATACATCGCCCAGCTGTTCTTGATGATTCTCTAAAGGAGCTATTGTCTTGGTTGGCAAGAGGCTTGATTTCCATCCACATTTCTCAGTCCTACCGCCTGTCAGAGGCCAACCTTGCGTTTTCTGCTATCAAAGATAGGAAAGTCATTGGGAAGGTGATGATTGTTTTTGATGATAAACTTGCAAGATCTAAGCTGTGA 1041 0.4486 MEALLCRKLGDPSLSLEDDNSPIIVSKNHPIPQLKSPTSVRVRIKATSLNFANYLQIQGKYQEKASLPFIPGSDYSGIVDAVGPKVSNFRVGDPVCSFAALGSFAEFIVVDENQLFRVPEGCDLVAAGALAVAFGTSHVALVHRAKLASAQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGAEKVQILKSLGVDHVVDLGSENVIESVKEFLKARRLKGVDVLYDPVGGKLTKESMKLLKWGAQILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPAVLDDSLKELLSWLARGLISIHISQSYRLSEANLAFSAIKDRKVIGKVMIVFDDKLARSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30279g00017 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Stsc30279g00017 346 SMART PKS_ER_names_mod 10 335 IPR020843 GO:0016491
Stsc30279g00017 346 SUPERFAMILY GroES-like 19 164 IPR011032 -
Stsc30279g00017 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Stsc30279g00017 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 288 IPR036291 -
Stsc30279g00017 346 Gene3D - 34 331 - -
Stsc30279g00017 346 CDD QOR1 1 335 - -
Stsc30279g00017 346 Gene3D - 133 280 - -
Stsc30279g00017 346 Pfam Zinc-binding dehydrogenase 161 299 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30279g00017 Stsc-Chr30279 129677 132122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30279g00017 40 266 Monolignol Biosynthesis Gene Families AT1G72680 27.273 9.67e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30279g00017 K00344 - gmx:100817700 574.704