Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30279g00007 ATGGAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTAGATAATAGCGGTATAGATACCAGTGATGTGACTTGGCGTAGTAGAATCAATATCCCCTTAAGATTCCGCAGTCCTCTTTCACTTGTGCTCGAATATTCTGGATTAATGGCCTCAAACACCAATGTTTCTGCTCCTGCACCTGAACCTGGAGATGGACCTTCAACTCCTCAATTGCGCCCTAGGTCTCAGCTTCAACTTGGTACTGGTTCTGGTTCTGGTGCGGGTGGTGCATGCAGTGGCACCGGTGAAGTTCAAATTCGCATAATTGGTACTGGGGACCAACACAACAATGGTGTGAGTGGGAGTTCGGCTTCCTCTTCTTCGCAGCCGAGTCGTGTGTCTCGATCGGGCCATCATGATTGTATTATGGTCAACGGACGGCCGTGGCCGCCGCCGAACATTACCGACCCGGAGACTCGGCAACGGCTGATTCAGGACCCGCCGGTGTACGAGACACCTGCATCTGAGGTGTATGAGTTTCTTGGGAGTGGTAATAGGAATGTTCAGCTAGCTGTTAAGTGGCTGGAGCAGCTTATCCCTTTCTCCCTCTTGCTGTTGGTGGTGTTCATTCGCCAGCATTTGCAAGCTGTGCTGCTTAAATCAAATGAGATGGTTAAGGAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTTTTCTTGTTGGCATCTCTTTTGCCTTCATGCTGCACGTGATAGGAGTTTACTGGTTTCAAAATGGTGATCTTTTATACCCAATTGCAATGCTACCTCCAAAAGAAACACCTCTTTTTTGGCATGCAATATTCACCATTTTGATCAATGATACACTGGTGCGACAAGCAGCAATGGCTTTCAAGCTTTTGGTGCTTATTTTCTGCAAATGTGGCAGAGGCCCCAGCTTCCGTCGGCAGGGTCAAATCTTAACTGCGGTTGAGTACATGCTGCTGTTGTATCGCGCCTTGCTGCCAACACCAGTTTGGTACCGTTTTTTCTTAAACAAGGCTTATGGAAGTCTCTTTTCATCACTGACCACAGGATTGTATTTAACATTCAAACTAACAACTTTAGTTGAGAAGGTCCAAAACTTCTTTTCTGCCTTAAGACTATTATCAGGAAGGAAAGTCCATTATGGGGTTTATGCTACAACAGAACAGGTAAATTCTGCTGGTGACCTTTGTGCTATATGCCAGGAGAAGATGCGAGCTCCGCTCTTGTTGCACTGTAAACACTTGTTCTGTGAAGAATGTGTATCCGAATGGCTTGAGCGAGAAAGGACTTGCCCATTATGCAGAGCAAATGTAAAATCTGCTGATCTGCTCACCTATGGAGATGGTTCGACAAGTATTTTATGCCAGTTGTTTTAA 1389 0.4572 MESSSSSSSSSSSSVDNSGIDTSDVTWRSRINIPLRFRSPLSLVLEYSGLMASNTNVSAPAPEPGDGPSTPQLRPRSQLQLGTGSGSGAGGACSGTGEVQIRIIGTGDQHNNGVSGSSASSSSQPSRVSRSGHHDCIMVNGRPWPPPNITDPETRQRLIQDPPVYETPASEVYEFLGSGNRNVQLAVKWLEQLIPFSLLLLVVFIRQHLQAVLLKSNEMVKEQTALKGDRKVSFLVGISFAFMLHVIGVYWFQNGDLLYPIAMLPPKETPLFWHAIFTILINDTLVRQAAMAFKLLVLIFCKCGRGPSFRRQGQILTAVEYMLLLYRALLPTPVWYRFFLNKAYGSLFSSLTTGLYLTFKLTTLVEKVQNFFSALRLLSGRKVHYGVYATTEQVNSAGDLCAICQEKMRAPLLLHCKHLFCEECVSEWLERERTCPLCRANVKSADLLTYGDGSTSILCQLF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30279g00007 462 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30279g00007 462 MobiDBLite consensus disorder prediction 56 95 - -
Stsc30279g00007 462 Pfam Zinc finger, C3HC4 type (RING finger) 399 444 - -
Stsc30279g00007 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 448 IPR013083 -
Stsc30279g00007 462 MobiDBLite consensus disorder prediction 71 90 - -
Stsc30279g00007 462 ProSitePatterns Zinc finger RING-type signature. 416 425 IPR017907 -
Stsc30279g00007 462 MobiDBLite consensus disorder prediction 107 136 - -
Stsc30279g00007 462 MobiDBLite consensus disorder prediction 107 130 - -
Stsc30279g00007 462 ProSiteProfiles Zinc finger RING-type profile. 401 439 IPR001841 -
Stsc30279g00007 462 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 6 462 IPR044235 GO:0061630|GO:1904294
Stsc30279g00007 462 SMART ring_2 401 438 IPR001841 -
Stsc30279g00007 462 SUPERFAMILY RING/U-box 395 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30279g00007 Stsc-Chr30279 42915 47517 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30279g00007 38 462 C3H Transcription Factor Family AT5G01960 52.523 1.21e-152 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30279g00007 - K22379 gmx:100784614 468.774