Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30279g00004 ATGAAGTTTCGGTTCTCCATTTATGTGCTTGTCCTTCTAAGCTTCATAGTTTCACTCTTCGAATCGATTGTAGCTGATTTAAACTCTGACAAACAAGCTCTCTTGGAGTTTGCTTCAGCCGTTCCACATGCACCAAGGCTGAACTGGAATGAGTCTACTTCAGTTTGCAACTCATGGATTGGTGTGACTTGTAACTCAAACAGAACTCGAGTCACCGGAATCCATCTCCCGGGAATTGGACTAACCGGTTCAATTCCGGAGAACACCTTAGGAAAGCTAGACACTCTAAGAGTCCTTAGCCTTCATTCAAATGGCCTTAAAGGAAACCTTCCTTCTGACATAATTTCCATTCCTTCACTCCAATTTGCACTGCTTCACCACAATAACTTCTCAGGTCCAATTCCTTCCTCTGTCTCCCCTAAACTCGTTGCGTTTGATGTTTCCTTTAACTCCTTCTCTGGAAGAATTCCACCAACATTTCAGAATCTGAGAAGACTCACCTGGTTGTATTTACAAAACAACAACATTTCTGGAACTATACCTGACTTCAACCTTCCAAGGCTTAAACAATTGAATTTGAGCTATAATAACTTGAATGGAACAATTCCAAATTCCATTAAGACATTCCCATACACTTCTTTCATAGGTAATTCGCGCTTATGCGGACCGCCTATCAATAATTGCTCAGCAATCTCCCCTTCTCCATCTCCTTCCCCTGATGGCATACTCAAAGGGAAGGGATCTTGTGCTGGAAAGACTGAGATTTCAAAGAGTTTTGGGAGTGGAGTTCAAGCGGCTGAAAAGAACAAGTTGTTCTTCTTTGAAGGTTCATCTGATAGCTTTGATCTTGAGGACTTATTGAAGGCTTCAGCCGAAGTTCTTGGTAAAGGGAGTTATGGAACAGCATACAAGGCTGTTTTGGAGGATGGAACAACCGTGGTAGTTAAACGGTTGAAGGAAGTAGTTGTTGGAAAGAAGGAGTTTGAGCAGCAGATGGAAATTGTTGGGAGGATTGGACGCCACCCGAATGTCATGCCACTTCGCGCTTATTACTATTCCAAAGATGAGAAGCTTCTAGTTTACAACTTCATGCTTGGAGGAAGCTTGTTTCAGTTGCTGCATGGAAACAGGGGTGCAGGTGCAACAAGAACTCCATTAGACTGGGATTCAAGGGTGAAGATTTCACTTGGAGCAGCCAAAGGAATTGCAATGATTCACTCTGAATGCGGTCCAAAGTTCACGCATGGCAACATCAAGTCCACCAATGTTCTCATATCCCAAGAACTTGATGCCTGCATCTCTGATATTGGCTTGCCTCCACTGATGAACACTCCGGCAACAATGTCAAGAGCCAATGGCTACCGTGCTCCAGAAGTAACCGACGCGAAGAAGATCACACAAAAATCTGATGTGTACAGCTTTGGTGTGCTCCTTCTTGAAATGTTGACAGGGAAGACAGCAATGAGGTATCCGGGGCATGAAGACACCGTCGATCTTCCAAGGTGGGTGAAGTCTGTTGTTAGAGAGGAATGGACAGCTGAAGTTTTCGACGAGGAGCTTCTAAGAGGCCAATATGTTGAAGAGGAGATGGTGCAGATGCTTCAGATTGCACTGGCTTGTGTTGCTAAGACACCTGATATGAGGCCTAAAATGGATGAAGCTGTTAGGATGATAGAGGAAATTAAGCACCCTGAGTCAAAGAACAGGCCGTCCTCTGAGTCGGAGTCTAATGTGCAAACACCATGA 1746 0.4422 MKFRFSIYVLVLLSFIVSLFESIVADLNSDKQALLEFASAVPHAPRLNWNESTSVCNSWIGVTCNSNRTRVTGIHLPGIGLTGSIPENTLGKLDTLRVLSLHSNGLKGNLPSDIISIPSLQFALLHHNNFSGPIPSSVSPKLVAFDVSFNSFSGRIPPTFQNLRRLTWLYLQNNNISGTIPDFNLPRLKQLNLSYNNLNGTIPNSIKTFPYTSFIGNSRLCGPPINNCSAISPSPSPSPDGILKGKGSCAGKTEISKSFGSGVQAAEKNKLFFFEGSSDSFDLEDLLKASAEVLGKGSYGTAYKAVLEDGTTVVVKRLKEVVVGKKEFEQQMEIVGRIGRHPNVMPLRAYYYSKDEKLLVYNFMLGGSLFQLLHGNRGAGATRTPLDWDSRVKISLGAAKGIAMIHSECGPKFTHGNIKSTNVLISQELDACISDIGLPPLMNTPATMSRANGYRAPEVTDAKKITQKSDVYSFGVLLLEMLTGKTAMRYPGHEDTVDLPRWVKSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKTPDMRPKMDEAVRMIEEIKHPESKNRPSSESESNVQTP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30279g00004 581 FunFam Leucine-rich repeat receptor-like protein kinase 140 228 - -
Stsc30279g00004 581 Pfam Protein kinase domain 292 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30279g00004 581 PANTHER OS05G0588300 PROTEIN 7 573 - -
Stsc30279g00004 581 SUPERFAMILY L domain-like 40 215 - -
Stsc30279g00004 581 ProSitePatterns Protein kinases ATP-binding region signature. 294 325 IPR017441 GO:0005524
Stsc30279g00004 581 SUPERFAMILY Protein kinase-like (PK-like) 292 561 IPR011009 -
Stsc30279g00004 581 Gene3D Transferase(Phosphotransferase) domain 1 364 580 - -
Stsc30279g00004 581 MobiDBLite consensus disorder prediction 560 581 - -
Stsc30279g00004 581 FunFam pollen receptor-like kinase 1 256 363 - -
Stsc30279g00004 581 FunFam Leucine-rich repeat receptor-like protein kinase 29 139 - -
Stsc30279g00004 581 Gene3D Ribonuclease Inhibitor 141 229 IPR032675 -
Stsc30279g00004 581 CDD STKc_IRAK 294 561 - -
Stsc30279g00004 581 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Stsc30279g00004 581 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 364 572 - -
Stsc30279g00004 581 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Stsc30279g00004 581 Gene3D Phosphorylase Kinase; domain 1 254 363 - -
Stsc30279g00004 581 Pfam Leucine rich repeat 140 198 IPR001611 GO:0005515
Stsc30279g00004 581 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30279g00004 Stsc-Chr30279 19047 21232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30279g00004 1 579 Receptor kinase-like Gene Family AT5G58300 55.810 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30279g00004 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30279g00004 - - qsa:O6P43_014864 795.423