Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30278g00022 ATGGAGATGGAGATGGAGGAGTTGAAATGGAAGAAAAAGGGGAGAATGTTGCAGATGGAAAGCAGGTACAAGACAGAGGTGTGTAGGAGATTCATGGCGGGGAGTTGTGGGGATGGATCAAAATGCAGGTATGCCCATGGTGTTTCGGAGCTGAGAGTGAGAGGAGGATGCCCTAAAGTGTGCAGAATGTTCTCTCTTTACAGAAACTGCTCATATGGCCACAAGTGTCGCTTCCTTCATCATCTTCATCATCCCCAACCACCACCAGAATACACGCCAATGCAAACAGAAACAACTAGTTTTACAAATGCCTCAAGCAGCACACTGGTGGAAACTAATGCTAATGAACAAGCACCAGAGACACAGAGAGTCAAGTTCATTTTCAAGGATCATCAACTCCAAAAGATCAGTCGCATCTATGCAGATTGGATCTAA 435 0.4529 MEMEMEELKWKKKGRMLQMESRYKTEVCRRFMAGSCGDGSKCRYAHGVSELRVRGGCPKVCRMFSLYRNCSYGHKCRFLHHLHHPQPPPEYTPMQTETTSFTNASSSTLVETNANEQAPETQRVKFIFKDHQLQKISRIYADWI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30278g00022 144 Gene3D - 16 53 - -
Stsc30278g00022 144 SMART c3hfinal6 57 82 IPR000571 GO:0046872
Stsc30278g00022 144 SMART c3hfinal6 22 48 IPR000571 GO:0046872
Stsc30278g00022 144 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 23 47 IPR000571 GO:0046872
Stsc30278g00022 144 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 107 IPR045877 GO:0003729
Stsc30278g00022 144 ProSiteProfiles Zinc finger C3H1-type profile. 22 49 IPR000571 GO:0046872
Stsc30278g00022 144 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Stsc30278g00022 144 SUPERFAMILY CCCH zinc finger 20 53 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30278g00022 Stsc-Chr30278 64747 65392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30278g00022 24 82 C3H Transcription Factor Family AT1G68200 43.750 8.21e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc30278g00022 zf-CCCH 1.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30278g00022 - - ahf:112703739 184.496